diff --git a/CMake/CTestCustom.cmake.in b/CMake/CTestCustom.cmake.in
index 519e48abefb3397248fa6523f73144316f095300..81a8fb0aab89d12bab318bb86f2c4607b264e111 100644
--- a/CMake/CTestCustom.cmake.in
+++ b/CMake/CTestCustom.cmake.in
@@ -36,8 +36,8 @@ SET(CTEST_CUSTOM_COVERAGE_EXCLUDE
  ".*/Utilities/.*"
  
  # Exclude SWIG wrappers files
- "/Code/Wrappers/SWIG/otbApplicationPYTHON_wrap.cxx"
- "/Code/Wrappers/SWIG/otbApplicationJAVA_wrap.cxx"
+ ".*/Code/Wrappers/SWIG/otbApplicationPYTHON_wrap.*"
+ ".*/Code/Wrappers/SWIG/otbApplicationJAVA_wrap.*"
  )
 
 SET(CTEST_CUSTOM_WARNING_EXCEPTION