diff --git a/Modules/Applications/AppClassification/app/CMakeLists.txt b/Modules/Applications/AppClassification/app/CMakeLists.txt index e2cb4826df330abd6a6751de979949a774688c22..79cc0eb6ec558e8b1e69ba007ee300842f95e5dc 100644 --- a/Modules/Applications/AppClassification/app/CMakeLists.txt +++ b/Modules/Applications/AppClassification/app/CMakeLists.txt @@ -50,11 +50,6 @@ otb_create_application( SOURCES otbTrainVectorClassifier.cxx LINK_LIBRARIES ${${otb-module}_LIBRARIES}) -otb_create_application( - NAME TrainVectorUnsupervised - SOURCES otbTrainVectorUnsupervised.cxx - LINK_LIBRARIES ${${otb-module}_LIBRARIES}) - otb_create_application( NAME ComputeConfusionMatrix SOURCES otbComputeConfusionMatrix.cxx @@ -80,11 +75,6 @@ otb_create_application( SOURCES otbTrainImagesClassifier.cxx LINK_LIBRARIES ${${otb-module}_LIBRARIES}) -otb_create_application( - NAME TrainImagesUnsupervised - SOURCES otbTrainImagesUnsupervised.cxx - LINK_LIBRARIES ${${otb-module}_LIBRARIES}) - otb_create_application( NAME TrainRegression SOURCES otbTrainRegression.cxx diff --git a/Modules/Applications/AppClassification/test/CMakeLists.txt b/Modules/Applications/AppClassification/test/CMakeLists.txt index 7cda61f5b4ba329a6fd25e07e05dca16e2bc8802..1737b6cc3e95a993de4bb1c66a8fbdf96979f48c 100644 --- a/Modules/Applications/AppClassification/test/CMakeLists.txt +++ b/Modules/Applications/AppClassification/test/CMakeLists.txt @@ -76,6 +76,7 @@ set(bayes_output_format ".bayes") set(rf_output_format ".rf") set(knn_output_format ".knn") set(sharkrf_output_format ".txt") +set(sharkkm_output_format ".txt") # Training algorithms parameters set(libsvm_parameters "-classifier.libsvm.opt" "true" "-classifier.libsvm.prob" "true") @@ -88,7 +89,7 @@ set(bayes_parameters "") set(rf_parameters "") set(knn_parameters "") set(sharkrf_parameters "") - +set(sharkkm_parameters "") # Validation depending on mode set(ascii_comparison --compare-ascii ${EPSILON_6}) @@ -108,7 +109,7 @@ if(OTB_USE_OPENCV) list(APPEND classifierList "BOOST" "DT" "GBT" "ANN" "BAYES" "RF" "KNN") endif() if(OTB_USE_SHARK) - list(APPEND classifierList "SHARKRF") + list(APPEND classifierList "SHARKRF" "SHARKKM") endif() set(classifier_with_confmap "LIBSVM" "BOOST" "KNN" "ANN" "RF") @@ -224,124 +225,6 @@ foreach(classifier ${classifierList}) endforeach() - -#----------- TrainImagesUnsupervised TESTS ---------------- - -set(sharkkm_output_format ".txt") -set(sharkkm_parameters "") - -if(OTB_USE_SHARK) - list(APPEND UnsupervisedList "SHARKKM") -endif() - -list(APPEND classifier_without_baseline "SHARKKM") - -# Loop on classifiers -foreach(classifier ${UnsupervisedList}) - string(TOLOWER ${classifier} lclassifier) - - # Derive output file name - set(OUTMODELFILE cl${classifier}_ModelQB1${${lclassifier}_output_format}) - set(OUTRASTER cl${classifier}LabeledImageQB1${raster_output_format}) - set(OUTCONFMAP cl${classifier}ConfidenceMapQB1${raster_output_format}) - - list(FIND classifier_without_baseline ${classifier} _classifier_has_baseline) - if(${_classifier_has_baseline} EQUAL -1) - set(valid ${ascii_comparison} ${ascii_ref_path}/${OUTMODELFILE} ${TEMP}/${OUTMODELFILE}) - else() - set(valid "") - endif() - - otb_test_application( - NAME apTvClTrainMethod${classifier}ImagesClassifierQB1 - APP TrainImagesUnsupervised - OPTIONS -io.il ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} - -io.vd ${INPUTDATA}/Classification/VectorData_${${lclassifier}_input}QB1${vector_input_format} - -io.imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format} - -classifier ${lclassifier} - ${${lclassifier}_parameters} - -io.out ${TEMP}/${OUTMODELFILE} - -sample.vfn Class - -rand 121212 - - VALID ${valid} - ) - - if(${_classifier_has_baseline} EQUAL -1) - set(valid ${ascii_comparison} ${ascii_ref_path}/${OUTMODELFILE} ${TEMP}/OutXML1_${OUTMODELFILE}) - else() - set(valid "") - endif() - - otb_test_application( - NAME apTvClTrainMethod${classifier}ImagesClassifierQB1_OutXML1 - APP TrainImagesUnsupervised - OPTIONS -io.il ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} - -io.vd ${INPUTDATA}/Classification/VectorData_${${lclassifier}_input}QB1${vector_input_format} - -io.imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format} - -classifier ${lclassifier} - ${${lclassifier}_parameters} - -io.out ${TEMP}/OutXML1_${OUTMODELFILE} - -rand 121212 - -sample.vfn Class - -outxml ${TEMP}/cl${classifier}_OutXML1.xml - - VALID ${valid} - ) - - if(${_classifier_has_baseline} EQUAL -1) - set(valid ${ascii_comparison} ${ascii_ref_path}/${OUTMODELFILE} ${TEMP}/OutXML2_${OUTMODELFILE}) - else() - set(valid "") - endif() - - otb_test_application( - NAME apTvClTrainMethod${classifier}ImagesClassifierQB1_InXML1 - APP TrainImagesUnsupervised - OPTIONS -inxml ${INPUTDATA}/cl${classifier}_OutXML1.xml - -io.il ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} - -io.vd ${INPUTDATA}/Classification/VectorData_${${lclassifier}_input}QB1${vector_input_format} - -io.imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format} - -io.out ${TEMP}/OutXML2_${OUTMODELFILE} - -sample.vfn Class - VALID ${valid} - ) - - list(FIND classifier_with_confmap ${classifier} _classifier_has_confmap) - if(${_classifier_has_confmap} EQUAL -1) - otb_test_application( - NAME apTvClMethod${classifier}ImageClassifierQB1 - APP ImageClassifier - OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} - -model ${INPUTDATA}/Classification/${OUTMODELFILE} - -imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format} - -out ${TEMP}/${OUTRASTER} ${raster_output_option} - - VALID ${raster_comparison} - ${raster_ref_path}/${OUTRASTER} - ${TEMP}/${OUTRASTER} - ) - else() - otb_test_application( - NAME apTvClMethod${classifier}ImageClassifierQB1 - APP ImageClassifier - OPTIONS -in ${INPUTDATA}/Classification/QB_1_ortho${raster_input_format} - -model ${INPUTDATA}/Classification/${OUTMODELFILE} - -imstat ${INPUTDATA}/Classification/clImageStatisticsQB1${stat_input_format} - -out ${TEMP}/${OUTRASTER} ${raster_output_option} - -confmap ${TEMP}/${OUTCONFMAP} - - VALID ${raster_comparison_two} - ${raster_ref_path}/${OUTRASTER} - ${TEMP}/${OUTRASTER} - ${raster_ref_path}/${OUTCONFMAP} - ${TEMP}/${OUTCONFMAP} - ) - endif() - -endforeach() - - #----------- LIBSVM Classifier TESTS ---------------- if(OTB_USE_LIBSVM) @@ -1051,17 +934,17 @@ if(OTB_USE_OPENCV) ${TEMP}/apTvClTrainVectorClassifierModel.rf) endif() -#----------- TrainVectorUnsupervised TESTS ---------------- +#----------- TrainVectorClassifier unsupervised TESTS ---------------- if(OTB_USE_SHARK) otb_test_application(NAME apTvClTrainVectorUnsupervised - APP TrainVectorUnsupervised + APP TrainVectorClassifier OPTIONS -io.vd ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -feat value_0 value_1 value_2 value_3 -classifier sharkkm -io.out ${TEMP}/apTvClTrainVectorClusteringModel.txt) otb_test_application(NAME apTvClTrainVectorUnsupervisedWithClass - APP TrainVectorUnsupervised + APP TrainVectorClassifier OPTIONS -io.vd ${INPUTDATA}/Classification/apTvClSampleExtractionOut.sqlite -feat value_0 value_1 value_2 value_3 -cfield class