diff --git a/CMake/CTestCustom.cmake.in b/CMake/CTestCustom.cmake.in
index a2416c69f341f60e37c060ce71168ad0adfa2051..9d7cc2ae3132af7fa087f2aac7b5e98b52a3d1f2 100644
--- a/CMake/CTestCustom.cmake.in
+++ b/CMake/CTestCustom.cmake.in
@@ -62,8 +62,9 @@ set(CTEST_CUSTOM_COVERAGE_EXCLUDE
  ".*/Utilities/.*"
 
  # Exclude SWIG wrappers files
- ".*/Modules/Wrappers/SWIG/src/otbApplicationPYTHON_wrap.*"
- ".*/Modules/Wrappers/SWIG/src/otbApplicationJAVA_wrap.*"
+ ".*/Modules/Wrappers/SWIG/src/python/otbApplicationPYTHON_wrap.*"
+ ".*/Modules/Wrappers/SWIG/src/python3/otbApplicationPYTHON_wrap.*"
+ ".*/Modules/Wrappers/SWIG/src/java/otbApplicationJAVA_wrap.*"
 
  # Exclude Qt moc file
  ".*moc_.*"