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/*=========================================================================
Program: ORFEO Toolbox
Language: C++
Date: $Date$
Version: $Revision$
Copyright (c) Centre National d'Etudes Spatiales. All rights reserved.
See OTBCopyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#include "otbWrapperApplication.h"
#include "otbWrapperApplicationFactory.h"
#include "otbScalarImageToTexturesFilter.h"
#include "otbScalarImageToAdvancedTexturesFilter.h"
#include "otbScalarImageToHigherOrderTexturesFilter.h"
#include "otbMultiToMonoChannelExtractROI.h"
#include "otbImageList.h"
#include "otbImageListToVectorImageFilter.h"
#include "itkTimeProbe.h"
namespace otb
{
namespace Wrapper
{
class HaralickTextureExtraction : public Application
{
public:
/** Standard class typedefs. */
typedef HaralickTextureExtraction Self;
typedef Application Superclass;
typedef itk::SmartPointer<Self> Pointer;
typedef itk::SmartPointer<const Self> ConstPointer;
typedef MultiToMonoChannelExtractROI<FloatVectorImageType::InternalPixelType,FloatVectorImageType::InternalPixelType>
ExtractorFilterType;
typedef ScalarImageToTexturesFilter<FloatImageType, FloatImageType> HarTexturesFilterType;
typedef ScalarImageToAdvancedTexturesFilter<FloatImageType, FloatImageType> AdvTexturesFilterType;
typedef ScalarImageToHigherOrderTexturesFilter<FloatImageType, FloatImageType> HigTexturesFilterType;
typedef HarTexturesFilterType::SizeType RadiusType;
typedef HarTexturesFilterType::OffsetType OffsetType;
typedef ImageList<FloatImageType> ImageListType;
typedef ImageListToVectorImageFilter<ImageListType, FloatVectorImageType> ImageListToVectorImageFilterType;
/** Standard macro */
itkNewMacro(Self);
itkTypeMacro(HaralickTextureExtraction, otb::Application);
private:
void DoInit()
{
SetName("HaralickTextureExtraction");
SetDescription("Computes textures on every pixel of the input image selected channel");
// Documentation
SetDocName("Haralick Texture Extraction");
SetDocLongDescription("This application computes Haralick, advanced an higher order textures on a mono band image");
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SetDocLimitations("None");
SetDocAuthors("OTB-Team");
SetDocSeeAlso("otbScalarImageToTexturesFilter, otbScalarImageToAdvancedTexturesFilter and otbScalarImageToHigherOrderTexturesFilter classes");
AddDocTag("Textures");
AddDocTag(Tags::FeatureExtraction);
AddParameter(ParameterType_InputImage, "in", "Input Image");
SetParameterDescription("in", "The input image to compute the features on.");
AddParameter(ParameterType_Int, "channel", "Selected Channel");
SetParameterDescription("channel", "The selected channel index");
SetDefaultParameterInt("channel", 1);
SetMinimumParameterIntValue("channel", 1);
AddRAMParameter();
AddParameter(ParameterType_Group, "parameters", "Texture feature parameters");
SetParameterDescription("parameters","This group of parameters allows to define texture parameters.");
AddParameter(ParameterType_Int,"parameters.xrad","X Radius");
SetParameterDescription("parameters.xrad", "X Radius");
SetDefaultParameterInt("parameters.xrad", 2);
AddParameter(ParameterType_Int,"parameters.yrad","Y Radius");
SetParameterDescription("parameters.yrad", "Y Radius");
SetDefaultParameterInt("parameters.yrad", 2);
AddParameter(ParameterType_Int,"parameters.xoff","X Offset");
SetParameterDescription("parameters.xoff", "X Offset");
SetDefaultParameterInt("parameters.xoff", 1);
AddParameter(ParameterType_Int,"parameters.yoff","Y Offset");
SetParameterDescription("parameters.yoff", "Y Offset");
SetDefaultParameterInt("parameters.yoff", 1);
AddParameter(ParameterType_Float,"parameters.min","Image Minimum");
SetParameterDescription("parameters.min", "Image Minimum");
SetDefaultParameterFloat("parameters.min", 0);
AddParameter(ParameterType_Float,"parameters.max","Image Maximum");
SetParameterDescription("parameters.max", "Image Maximum");
SetDefaultParameterFloat("parameters.max", 255);
AddParameter(ParameterType_Int,"parameters.nbbin","Histogram number of bin");
SetParameterDescription("parameters.nbbin", "Histogram number of bin");
SetDefaultParameterInt("parameters.nbbin", 8);
AddParameter(ParameterType_Group, "har", "Haralick Texture Features");
SetParameterDescription("har","This group of parameters defines the 8 local Haralick texture feature output image.\
The image channels are: Energy, Entropy, Correlation, Inverse Difference Moment,\
Inertia, Cluster Shade, Cluster Prominence and Haralick Correlation");
AddParameter(ParameterType_OutputImage, "har.out", "8 Local Haralick Texture Feature Output Image");
SetParameterDescription("har.out", "Output image containing the Haralick texture features.");
MandatoryOff("har.out");
EnableParameter("har.out");
AddParameter(ParameterType_Group, "adv", "Advanced Texture Features");
SetParameterDescription("adv","This group of parameters defines the 9 advanced texture feature output image.\
The image channels are: Mean, Variance, Sum Average, Sum Variance,\
Sum Entropy, Difference of Entropies, Difference of Variances, IC1 and IC2");
AddParameter(ParameterType_OutputImage, "adv.out", "Advanced Texture Feature Output Image");
SetParameterDescription("adv.out", "Output image containing the advanced texture features.");
MandatoryOff("adv.out");
AddParameter(ParameterType_Group, "hig", "Higher Order Texture Features");
SetParameterDescription("hig","This group of parameters defines the 11 higher order texture feature output image.\
The image channels are: Short Run Emphasis, Long Run Emphasis, Grey-Level Nonuniformity, Run Length Nonuniformity, Run Percentage, \
Low Grey-Level Run Emphasis, High Grey-Level Run Emphasis, Short Run Low Grey-Level Emphasis, Short Run High Grey-Level Emphasis, \
Long Run Low Grey-Level Emphasis and Long Run High Grey-Level Emphasis");
AddParameter(ParameterType_OutputImage, "hig.out", "11 Local Higher Order Texture Feature Output Image");
SetParameterDescription("hig.out", "Output image containing the higher order texture features.");
MandatoryOff("hig.out");
// Doc example parameter settings
SetDocExampleParameterValue("in", "qb_RoadExtract.tif");
SetDocExampleParameterValue("channel", "2");
SetDocExampleParameterValue("parameters.xrad", "3");
SetDocExampleParameterValue("parameters.yrad", "3");
SetDocExampleParameterValue("har.out", "HaralickTextures.tif");
}
void DoUpdateParameters()
{
// Nothing to do here : all parameters are independent
}
void DoExecute()
{
FloatVectorImageType::Pointer inImage = GetParameterImage("in");
inImage->UpdateOutputInformation();
if( GetParameterInt("channel") > inImage->GetNumberOfComponentsPerPixel() )
{
otbAppLogCRITICAL("Selected band is not available...");
return;
}
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RadiusType radius;
radius[0] = GetParameterInt("parameters.xrad");
radius[1] = GetParameterInt("parameters.yrad");
OffsetType offset;
offset[0] = GetParameterInt("parameters.xoff");
offset[1] = GetParameterInt("parameters.yoff");
m_ExtractorFilter = ExtractorFilterType::New();
m_ExtractorFilter->SetInput(inImage);
m_ExtractorFilter->SetStartX(inImage->GetLargestPossibleRegion().GetIndex(0));
m_ExtractorFilter->SetStartY(inImage->GetLargestPossibleRegion().GetIndex(1));
m_ExtractorFilter->SetSizeX(inImage->GetLargestPossibleRegion().GetSize(0));
m_ExtractorFilter->SetSizeY(inImage->GetLargestPossibleRegion().GetSize(1));
m_ExtractorFilter->SetChannel(GetParameterInt("channel"));
m_ExtractorFilter->UpdateOutputInformation();
m_HarTexFilter = HarTexturesFilterType::New();
m_HarImageList = ImageListType::New();
m_HarConcatener = ImageListToVectorImageFilterType::New();
m_AdvTexFilter = AdvTexturesFilterType::New();
m_AdvImageList = ImageListType::New();
m_AdvConcatener = ImageListToVectorImageFilterType::New();
m_HigTexFilter = HigTexturesFilterType::New();
m_HigImageList = ImageListType::New();
m_HigConcatener = ImageListToVectorImageFilterType::New();
if( this->HasValue("har.out") )
{
m_HarTexFilter->SetInput(const_cast<FloatImageType*>(m_ExtractorFilter->GetOutput()));
m_HarTexFilter->SetRadius(radius);
m_HarTexFilter->SetOffset(offset);
m_HarTexFilter->SetInputImageMinimum(GetParameterFloat("parameters.min"));
m_HarTexFilter->SetInputImageMaximum(GetParameterFloat("parameters.max"));
m_HarTexFilter->SetNumberOfBinsPerAxis(GetParameterInt("parameters.nbbin"));
m_HarTexFilter->UpdateOutputInformation();
m_HarImageList->PushBack(m_HarTexFilter->GetEnergyOutput());
m_HarImageList->PushBack(m_HarTexFilter->GetEntropyOutput());
m_HarImageList->PushBack(m_HarTexFilter->GetCorrelationOutput());
m_HarImageList->PushBack(m_HarTexFilter->GetInverseDifferenceMomentOutput());
m_HarImageList->PushBack(m_HarTexFilter->GetInertiaOutput());
m_HarImageList->PushBack(m_HarTexFilter->GetClusterShadeOutput());
m_HarImageList->PushBack(m_HarTexFilter->GetClusterProminenceOutput());
m_HarImageList->PushBack(m_HarTexFilter->GetHaralickCorrelationOutput());
m_HarConcatener->SetInput(m_HarImageList);
SetParameterOutputImage("har.out", m_HarConcatener->GetOutput());
}
if( this->HasValue("adv.out") )
{
m_AdvTexFilter->SetInput(const_cast<FloatImageType*>(m_ExtractorFilter->GetOutput()));
m_AdvTexFilter->SetRadius(radius);
m_AdvTexFilter->SetOffset(offset);
m_AdvTexFilter->SetInputImageMinimum(GetParameterFloat("parameters.min"));
m_AdvTexFilter->SetInputImageMaximum(GetParameterFloat("parameters.max"));
m_AdvTexFilter->SetNumberOfBinsPerAxis(GetParameterInt("parameters.nbbin"));
m_AdvImageList->PushBack(m_AdvTexFilter->GetMeanOutput());
m_AdvImageList->PushBack(m_AdvTexFilter->GetVarianceOutput());
m_AdvImageList->PushBack(m_AdvTexFilter->GetSumAverageOutput());
m_AdvImageList->PushBack(m_AdvTexFilter->GetSumVarianceOutput());
m_AdvImageList->PushBack(m_AdvTexFilter->GetSumEntropyOutput());
m_AdvImageList->PushBack(m_AdvTexFilter->GetDifferenceEntropyOutput());
m_AdvImageList->PushBack(m_AdvTexFilter->GetDifferenceVarianceOutput());
m_AdvImageList->PushBack(m_AdvTexFilter->GetIC1Output());
m_AdvImageList->PushBack(m_AdvTexFilter->GetIC2Output());
m_AdvConcatener->SetInput(m_AdvImageList);
SetParameterOutputImage("adv.out", m_AdvConcatener->GetOutput());
}
if( this->HasValue("hig.out") )
{
m_HigTexFilter->SetInput(const_cast<FloatImageType*>(m_ExtractorFilter->GetOutput()));
m_HigTexFilter->SetRadius(radius);
m_HigTexFilter->SetOffset(offset);
m_HigTexFilter->SetInputImageMinimum(GetParameterFloat("parameters.min"));
m_HigTexFilter->SetInputImageMaximum(GetParameterFloat("parameters.max"));
m_HigTexFilter->SetNumberOfBinsPerAxis(GetParameterInt("parameters.nbbin"));
m_HigImageList->PushBack(m_HigTexFilter->GetShortRunEmphasisOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetLongRunEmphasisOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetGreyLevelNonuniformityOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetRunLengthNonuniformityOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetRunPercentageOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetLowGreyLevelRunEmphasisOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetHighGreyLevelRunEmphasisOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetShortRunLowGreyLevelEmphasisOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetShortRunHighGreyLevelEmphasisOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetLongRunLowGreyLevelEmphasisOutput());
m_HigImageList->PushBack(m_HigTexFilter->GetLongRunHighGreyLevelEmphasisOutput());
m_HigConcatener->SetInput(m_HigImageList);
SetParameterOutputImage("hig.out", m_HigConcatener->GetOutput());
}
}
ExtractorFilterType::Pointer m_ExtractorFilter;
HarTexturesFilterType::Pointer m_HarTexFilter;
ImageListType::Pointer m_HarImageList;
ImageListToVectorImageFilterType::Pointer m_HarConcatener;
AdvTexturesFilterType::Pointer m_AdvTexFilter;
ImageListType::Pointer m_AdvImageList;
ImageListToVectorImageFilterType::Pointer m_AdvConcatener;
HigTexturesFilterType::Pointer m_HigTexFilter;
ImageListType::Pointer m_HigImageList;
ImageListToVectorImageFilterType::Pointer m_HigConcatener;
};
}
}
OTB_APPLICATION_EXPORT(otb::Wrapper::HaralickTextureExtraction)