STY: Removing unused scripts

python_src/diapOTB.py

-#!/usr/bin/env python
-# -*- coding: utf-8 -*-
-
-__author__ = "POC-THALES"
-__version__ = "0.1"
-__status__ = "Developpement"
-__date__ = "27/10/2017"
-__last_modified__ = "27/10/2017"
-
-# Imports
-import logging
-import ConfigParser
-import os
-import argparse
-
-import otbApplication as otb
-
-logger = logging.getLogger(__name__)
-
-# ConfigParser functions
-# Get a map of sections 
-def ConfigSectionMap(config, section):
-    dict1 = {}
-    options = config.options(section)
-  
-    for option in options:
-        try:
-            dict1[option] = config.get(section, option)
-            if dict1[option] == -1:
-                DebugPrint("skip: %s" % option)
-        except:
-            print("exception on %s!" % option)
-            dict1[option] = None
-    
-    return dict1
-
-# Check the configuration file
-def ConfigCheck(config):
-    configOk = True
-    # List for configuration
-    listOfSections = ["Global", "MultiLook", "Doppler0"]
-    globalList = ["Master_Image_Path", "Slave_Image_Path", "output_dir"]
-    MLList = ["range", "azimut", "gain"]
-    Doppler0List = ["doppler_file"] 
-
-    dictOfSections = {'Global': globalList, 'MultiLook': MLList, 'Doppler0' : Doppler0List}
-
-    # For each elt of listOfSections
-    for section in listOfSections :
-        # Check if section exists into config
-        if config.has_section(section) :
-            # For each elt of lists of dictOfSections
-            for option in dictOfSections[section] :
-                # Check if option exists into section of config
-                if not config.has_option(section, option) :
-                    print option + " is missing for the section " + section + " of the configuration file"
-                    configOk = False
-
-        else :
-            print section + " is missing into the configuration file"
-            configOk = False
-        
-
-    return configOk
-
-
-
-# Main
-if __name__ == "__main__":
-    
-    # Check arguments
-    parser = argparse.ArgumentParser()
-    parser.add_argument("configfile", help="input conguration file for the application DiapOTB")
-    args = parser.parse_args()
-    print args.configfile
-
-    # Read the configuration file
-    Config = ConfigParser.ConfigParser()
-    Config.read(args.configfile)
-    configOk = ConfigCheck(Config)
-    
-    # If some values are missing, quit the application
-    if not configOk :
-        quit()
-    
-    
-    # Get elements from configuration file
-    master_Image = ConfigSectionMap(Config, "Global")['master_image_path']
-    slave_Image =  ConfigSectionMap(Config, "Global")['slave_image_path']
-    output_dir = ConfigSectionMap(Config, "Global")['output_dir']
-
-    ml_range = int(ConfigSectionMap(Config, "MultiLook")['range'])
-    ml_azimut = int(ConfigSectionMap(Config, "MultiLook")['azimut'])
-    ml_gain = float(ConfigSectionMap(Config, "MultiLook")['gain'])
-
-    dop_file = ConfigSectionMap(Config, "Doppler0")['doppler_file']
-
-    # Check if images exist
-    if not os.path.exists(master_Image) :
-        print master_Image + " does not exists"
-        quit()
-    if not os.path.exists(slave_Image) :
-        print slave_Image + " does not exists"
-        quit()
-    if not os.path.exists(output_dir):
-        print "The output directory does not exist and will be created"
-        os.makedirs(output_dir)
-    else :
-        print "The output directory exists. Some files can be overwritten"
-
-    master_Image_base = os.path.basename(master_Image)
-    slave_Image_base = os.path.basename(slave_Image)
-
-    
-    ####################### Doppler Application ##########################
-    # Master
-    dopFile = open(os.path.join(output_dir, dop_file), "w")
-    dopFile.write("Doppler for master image : " + os.path.basename(master_Image_base)+ "\n")
-    dopFile.close()
-    appDoppler0Master = otb.Registry.CreateApplication("SARDoppler0")
-    appDoppler0Master.SetParameterString("in", master_Image)
-    appDoppler0Master.SetParameterString("outfile", os.path.join(output_dir, dop_file))
-    appDoppler0Master.SetParameterInt("ram", 4000)
-    appDoppler0Master.ExecuteAndWriteOutput()
-
-    # Slave
-    dopFile = open(os.path.join(output_dir, dop_file), "a")
-    dopFile.write("Doppler for slave image : " + os.path.basename(slave_Image_base) + "\n")
-    dopFile.close()
-    appDoppler0Slave = otb.Registry.CreateApplication("SARDoppler0")
-    appDoppler0Slave.SetParameterString("in", slave_Image)
-    appDoppler0Slave.SetParameterString("outfile", os.path.join(output_dir, dop_file))
-    appDoppler0Master.SetParameterInt("ram", 4000)
-    appDoppler0Slave.ExecuteAndWriteOutput()
-
-    ###################### MultiLook Application #########################
-    # Master
-    master_Image_ML = os.path.splitext(master_Image_base)[0] + "_ml.tif"
-    appMultiLookMaster = otb.Registry.CreateApplication("SARMultiLook")
-    appMultiLookMaster.SetParameterString("in", master_Image)
-    appMultiLookMaster.SetParameterString("out", os.path.join(output_dir, master_Image_ML))
-    appMultiLookMaster.SetParameterInt("mlran",ml_range)
-    appMultiLookMaster.SetParameterInt("mlazi",ml_azimut)
-    appMultiLookMaster.SetParameterFloat("mlgain", ml_gain)
-    appDoppler0Master.SetParameterInt("ram", 4000)
-    appMultiLookMaster.ExecuteAndWriteOutput()
-
-    # Slave
-    slave_Image_ML = os.path.splitext(slave_Image_base)[0] + "_ml.tif"
-    appMultiLookSlave = otb.Registry.CreateApplication("SARMultiLook")
-    appMultiLookSlave.SetParameterString("in", slave_Image)
-    appMultiLookSlave.SetParameterString("out", os.path.join(output_dir, slave_Image_ML))
-    appMultiLookSlave.SetParameterInt("mlran",ml_range)
-    appMultiLookSlave.SetParameterInt("mlazi",ml_azimut)
-    appMultiLookSlave.SetParameterFloat("mlgain", ml_gain)
-    appDoppler0Master.SetParameterInt("ram", 4000)
-    appMultiLookSlave.ExecuteAndWriteOutput()

python_src/ex_config.ini

-[Global]
-Master_Image_Path = image_1.tif
-Slave_Image_Path = image_2.tif
-output_dir = ./output_diapOTB
-
-[MultiLook]
-range = 3
-azimut = 3
-gain = 0.1	
-
-[Doppler0]
-doppler_file = dop0.txt
-

scripts/generate_diapOTBEnv.sh

-#!/bin/bash
-
-# Directory of teh current script
-dir_script=$(dirname $0)
-
-# Subtitute the varaible install_directory with the argument
-sed 's@${install_directory}@'"$1"'@' $dir_script/template_diapOTBEnv.sh > $dir_script/diapOTBEnv.sh 

scripts/template_diapOTBEnv.sh

-#!/bin/bash
-
-module load otb/develop
-export OTB_APPLICATION_PATH=${install_directory}/lib:$OTB_APPLICATION_PATH
-export LD_LIBRARY_PATH=${install_directory}/lib/:$LD_LIBRARY_PATH
-export PYTHONPATH=${install_directory}/python_src/:$PYTHONPATH
-export DIAPOTB_INSTALL=${install_directory}