PCAModel.h

#ifndef PCAModel_h
#define PCAModel_h

#include "DimensionalityReductionModel.h"
#include <shark/Algorithms/Trainers/PCA.h>

namespace otb
{
template <class TInputValue>
class ITK_EXPORT PCAModel: public  DimensionalityReductionModel<TInputValue,TInputValue>   
{

public:
	
	typedef PCAModel Self;
	typedef DimensionalityReductionModel<TInputValue,TInputValue> Superclass;
	typedef itk::SmartPointer<Self> Pointer;
	typedef itk::SmartPointer<const Self> ConstPointer;

	typedef typename Superclass::InputValueType InputValueType;
	typedef typename Superclass::InputSampleType InputSampleType;
	typedef typename Superclass::InputListSampleType InputListSampleType;
	typedef typename Superclass::TargetValueType TargetValueType;
	typedef typename Superclass::TargetSampleType TargetSampleType;
	typedef typename Superclass::TargetListSampleType TargetListSampleType;
	typedef typename Superclass::ConfidenceValueType ConfidenceValueType;
	typedef typename Superclass::ConfidenceSampleType ConfidenceSampleType;
	typedef typename Superclass::ConfidenceListSampleType ConfidenceListSampleType;

	itkNewMacro(Self);
	itkTypeMacro(AutoencoderModel, DimensionalityReductionModel);

	unsigned int GetDimension() {return m_Dimension;}; 
	itkSetMacro(Dimension,unsigned int);
	
	bool CanReadFile(const std::string & filename);
	bool CanWriteFile(const std::string & filename);

	void Save(const std::string & filename, const std::string & name="")  ITK_OVERRIDE;
	void Load(const std::string & filename, const std::string & name="")  ITK_OVERRIDE;

	void Train() ITK_OVERRIDE;
	//void Dimensionality_reduction()  {}; // Dimensionality reduction is done by DoPredict
	 

protected:
	PCAModel();	
	~PCAModel() ITK_OVERRIDE;
 
	virtual TargetSampleType DoPredict(const InputSampleType& input, ConfidenceValueType *quality=ITK_NULLPTR) const ITK_OVERRIDE;
	virtual void DoPredictBatch(const InputListSampleType *, const unsigned int & startIndex, const unsigned int & size, TargetListSampleType *, ConfidenceListSampleType * = ITK_NULLPTR) const ITK_OVERRIDE;
  
private:
	shark::LinearModel<> m_encoder;
	shark::LinearModel<> m_decoder;
	shark::PCA m_pca;
	unsigned int m_Dimension;

};
} // end namespace otb


#ifndef OTB_MANUAL_INSTANTIATION
#include "PCAModel.txx"
#endif


#endif