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Commit 689d1200 authored by Julien Malik's avatar Julien Malik
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COMP: remove dead code that is not compiling anymore

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Examples/Patented/CMakeLists.txt
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project(PatentedExamples)
include_regular_expression("^.*$")
#add_executable(FuzzyConnectednessImageFilter FuzzyConnectednessImageFilter.cxx )
#target_link_libraries(FuzzyConnectednessImageFilter OTBIO OTBCommon )
#add_executable(HybridSegmentationFuzzyVoronoi HybridSegmentationFuzzyVoronoi.cxx )
#target_link_libraries(HybridSegmentationFuzzyVoronoi OTBIO OTBCommon )
#Examples using SIFT
if(OTB_USE_SIFTFAST)
add_executable(SIFTDisparityMapEstimation SIFTDisparityMapEstimation.cxx )
......
Examples/Patented/FuzzyConnectednessImageFilter.cxx deleted 100644 → 0
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/*=========================================================================
Program: ORFEO Toolbox
Language: C++
Date: $Date$
Version: $Revision$
Copyright (c) Centre National d'Etudes Spatiales. All rights reserved.
See OTBCopyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
// Software Guide : BeginLatex
//
// This example illustrates the use of the
// \doxygen{itk}{SimpleFuzzyConnectednessScalarImageFilter}. This filter computes an
// affinity map from a seed point provided by the user. This affinity map
// indicates for every pixels how homogeneous is the path that will link it to
// the seed point.
//
// Please note that the Fuzzy Connectedness algorithm is covered by a Patent
// \cite{Udupa1998}. For this reason the current example is located in the
// \texttt{Examples/Patented} subdirectory.
//
// In order to use this algorithm we should first include the header files of
// the filter and the image class.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
#include "itkSimpleFuzzyConnectednessScalarImageFilter.h"
#include "otbImage.h"
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// Since the FuzzyConnectednessImageFilter requires an estimation of the
// gray level mean and variance for the region to be segmented, we use here the
// \doxygen{itk}{ConfidenceConnectedImageFilter} as a preprocessor that produces a
// rough segmentation and estimates from it the values of the mean and the
// variance.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
#include "itkConfidenceConnectedImageFilter.h"
// Software Guide : EndCodeSnippet
#include "otbImageFileReader.h"
#include "otbImageFileWriter.h"
int main(int argc, char *argv[])
{
if (argc < 7)
{
std::cerr << "Missing Parameters " << std::endl;
std::cerr << "Usage: " << argv[0];
std::cerr << " inputImage outputImage outputAffinityMap " << std::endl;
std::cerr << " seedX seedY multiplier " << std::endl;
return 1;
}
// Software Guide : BeginLatex
//
// Next, we declare the pixel type and image dimension and
// specify the image type to be used as input.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef float InputPixelType;
const unsigned int Dimension = 2;
typedef otb::Image<InputPixelType, Dimension> InputImageType;
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// Fuzzy connectedness computes first the affinity map and then thresholds
// its values in order to get a binary image as output. The type of the
// binary image is provided as the second template parameter of the filter.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef unsigned char BinaryPixelType;
typedef otb::Image<BinaryPixelType, Dimension> BinaryImageType;
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The Confidence connected filter type is instantiated using the input
// image type and a binary image type for output.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef itk::ConfidenceConnectedImageFilter<
InputImageType,
BinaryImageType
> ConfidenceConnectedFilterType;
ConfidenceConnectedFilterType::Pointer confidenceConnectedFilter =
ConfidenceConnectedFilterType::New();
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The fuzzy segmentation filter type is instantiated here using the input
// and binary image types as template parameters.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef itk::SimpleFuzzyConnectednessScalarImageFilter<
InputImageType,
BinaryImageType
> FuzzySegmentationFilterType;
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The fuzzy connectedness segmentation filter is created by invoking the
// \code{New()} method and assigning the result to a
// \doxygen{itk}{SmartPointer}.
//
// \index{itk::SimpleFuzzy\-Connectedness\-Scalar\-Image\-Filter!New()}
// \index{itk::SimpleFuzzy\-Connectedness\-Scalar\-Image\-Filter!Pointer}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
FuzzySegmentationFilterType::Pointer fuzzysegmenter =
FuzzySegmentationFilterType::New();
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The affinity map can be accessed through the type \code{FuzzySceneType}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef FuzzySegmentationFilterType::FuzzySceneType FuzzySceneType;
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// We instantiate reader and writer types
//
// Software Guide : EndLatex
typedef otb::ImageFileReader<InputImageType> ReaderType;
typedef otb::ImageFileWriter<BinaryImageType> WriterType;
typedef otb::ImageFileWriter<FuzzySceneType> FuzzyWriterType;
ReaderType::Pointer reader = ReaderType::New();
WriterType::Pointer writer = WriterType::New();
FuzzyWriterType::Pointer fwriter = FuzzyWriterType::New();
reader->SetFileName(argv[1]);
writer->SetFileName(argv[2]);
fwriter->SetFileName(argv[3]);
InputImageType::IndexType index;
index[0] = atoi(argv[4]);
index[1] = atoi(argv[5]);
const double varianceMultiplier = atof(argv[6]);
// Software Guide : BeginLatex
//
// The output of the reader is passed as input to the ConfidenceConnected image filter.
// Then the filter is executed in order to obtain estimations of the mean and variance
// gray values for the region to be segmented.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
confidenceConnectedFilter->SetInput(reader->GetOutput());
confidenceConnectedFilter->SetMultiplier(varianceMultiplier);
confidenceConnectedFilter->SetNumberOfIterations(2);
confidenceConnectedFilter->AddSeed(index);
confidenceConnectedFilter->Update();
// Software Guide : EndCodeSnippet
WriterType::Pointer confidenceWriter = WriterType::New();
confidenceWriter->SetInput(confidenceConnectedFilter->GetOutput());
confidenceWriter->SetFileName("confidenceConnectedPreprocessing.png");
confidenceWriter->Update();
// Software Guide : BeginLatex
//
// The input that is passed to the fuzzy segmentation filter is taken from
// the reader.
//
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetInput()}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
fuzzysegmenter->SetInput(reader->GetOutput());
// Software Guide : EndCodeSnippet
const double meanEstimation = confidenceConnectedFilter->GetMean();
const double varianceEstimation = confidenceConnectedFilter->GetVariance();
std::cout << "Mean estimation = " << meanEstimation << std::endl;
std::cout << "Variance estimation = " << varianceEstimation << std::endl;
// Software Guide : BeginLatex
//
// The parameters of the fuzzy segmentation filter are defined here. A seed
// point is provided with the method \code{SetObjectsSeed()} in order to
// initialize the region to be grown. Estimated values for the mean and
// variance of the object intensities are also provided with the methods
// \code{SetMean()} and \code{SetVariance()}, respectively. A threshold
// value for generating the binary object is preset with the method
// \code{SetThreshold()}. For details describing the role of the mean and
// variance on the computation of the segmentation, please see
// \cite{Udupa1996}.
//
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetObjectsSeed()}
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetMean()}
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetVariance()}
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetThreshold()}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
fuzzysegmenter->SetObjectSeed(index);
fuzzysegmenter->SetMean(meanEstimation);
fuzzysegmenter->SetVariance(varianceEstimation);
fuzzysegmenter->SetThreshold(0.5);
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The execution of the fuzzy segmentation filter is triggered by the
// \code{Update()} method.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
fuzzysegmenter->Update();
// Software Guide : EndCodeSnippet
// Software Guide : BeginCodeSnippet
writer->SetInput(fuzzysegmenter->GetOutput());
writer->Update();
// Software Guide : EndCodeSnippet
// Software Guide : BeginCodeSnippet
fwriter->SetInput(fuzzysegmenter->GetFuzzyScene());
fwriter->Update();
// Software Guide : EndCodeSnippet
return EXIT_SUCCESS;
}
Examples/Patented/HybridSegmentationFuzzyVoronoi.cxx deleted 100644 → 0
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/*=========================================================================
Program: ORFEO Toolbox
Language: C++
Date: $Date$
Version: $Revision$
Copyright (c) Centre National d'Etudes Spatiales. All rights reserved.
See OTBCopyright.txt for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
// Software Guide : BeginCommandLineArgs
// INPUTS: {QB_Suburb.png}
// OUTPUTS: {HybridSegmentationFuzzyVoronoiOutput.png}
// 111 38 75 20 0.5 3.0
// Software Guide : EndCommandLineArgs
// Software Guide : BeginLatex
//
// This example illustrates the use of the
// \doxygen{itk}{SimpleFuzzyConnectednessScalarImageFilter} and
// \doxygen{itk}{VoronoiSegmentationImageFilter} to build a hybrid segmentation that
// integrates fuzzy connectedness with the Voronoi diagram classification.
//
// Please note that the Fuzzy Connectedness algorithm is covered by a Patent
// \cite{Udupa1998}. For this reason the current example is located in the
// \texttt{Examples/Patented} subdirectory.
//
// First, we include the header files of the two filters.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
#include "itkSimpleFuzzyConnectednessScalarImageFilter.h"
#include "itkVoronoiSegmentationImageFilter.h"
// Software Guide : EndCodeSnippet
#include "otbImage.h"
#include "otbImageFileReader.h"
#include "otbImageFileWriter.h"
#include "itkRescaleIntensityImageFilter.h"
int main(int argc, char *argv[])
{
if (argc < 9)
{
std::cerr << "Missing Parameters " << std::endl;
std::cerr << "Usage: " << argv[0];
std::cerr << " inputImage outputImage seedX seedY " << std::endl;
std::cerr <<
" estimateMean estimateVariance (used by FuzzySegmentation) " << std::endl;
std::cerr <<
" meanTolerance standardDeviationTolerance (used by VoronoiSegmentation) "
<< std::endl;
return 1;
}
// Software Guide : BeginLatex
//
// Next, we declare the pixel type and image dimension and
// specify the image type to be used as input.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef float InputPixelType;
const unsigned int Dimension = 2;
typedef otb::Image<InputPixelType, Dimension> InputImageType;
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// Fuzzy connectedness segmentation is performed first to generate
// a rough segmentation that yields a sample from the
// region to be segmented. A binary result, representing the
// sample, is used as a prior for the next step. Here, we use the
// \doxygen{itk}{SimpleFuzzyConnectednessScalarImageFilter}, but we may
// also utilize any other image segmentation filter instead. The
// result produced by the fuzzy segmentation filter is stored in a
// binary image. Below, we declare the type of the image using a
// pixel type and a spatial dimension.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef unsigned char BinaryPixelType;
typedef otb::Image<BinaryPixelType, Dimension> BinaryImageType;
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The fuzzy segmentation filter type is instantiated here using the input
// and binary image types as template parameters.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef itk::SimpleFuzzyConnectednessScalarImageFilter<
InputImageType,
BinaryImageType
> FuzzySegmentationFilterType;
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The fuzzy connectedness segmentation filter is created by invoking the
// \code{New()} method and assigning the result to a
// \doxygen{itk}{SmartPointer}.
//
// \index{itk::SimpleFuzzy\-Connectedness\-Scalar\-Image\-Filter!New()}
// \index{itk::SimpleFuzzy\-Connectedness\-Scalar\-Image\-Filter!Pointer}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
FuzzySegmentationFilterType::Pointer fuzzysegmenter =
FuzzySegmentationFilterType::New();
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// In the next step of the hybrid segmentation method, the prior generated
// from the fuzzy segmentation is used to build a homogeneity measurement
// for the object. A VoronoiSegmentationImageFilter uses the
// homogeneity measurement to drive iterative subdivision of Voronoi regions
// and to generate the final segmentation result (for details, please see
// \cite{Imielinska2000b}). In this example, the result of the
// VoronoiSegmentationImageFilter is sent to a writer. Its output
// type is conveniently declared as one that is compatible with the writer.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef unsigned char OutputPixelType;
typedef otb::Image<OutputPixelType, Dimension> OutputImageType;
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The following lines instantiate the Voronoi segmentation filter.
//
// \index{itk::Voronoi\-Segmentation\-Image\-Filter!New()}
// \index{itk::Voronoi\-Segmentation\-Image\-Filter!Pointer}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef itk::VoronoiSegmentationImageFilter<
InputImageType,
OutputImageType,
BinaryImageType>
VoronoiSegmentationFilterType;
VoronoiSegmentationFilterType::Pointer voronoisegmenter =
VoronoiSegmentationFilterType::New();
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// \begin{figure} \center
// \includegraphics[width=0.44\textwidth]{QB_Suburb.eps}
// \includegraphics[width=0.44\textwidth]{HybridSegmentationFuzzyVoronoiOutput.eps}
// \itkcaption[Segmentation results for the hybrid segmentation
// approach]{Segmentation results for the hybrid segmentation approach.}
// \label{fig:HybridSegmentationFuzzyVoronoiOutput}
// \end{figure}
//
// Software Guide : EndLatex
// We instantiate reader and writer types
//
typedef otb::ImageFileReader<InputImageType> ReaderType;
typedef otb::ImageFileWriter<OutputImageType> WriterType;
ReaderType::Pointer reader = ReaderType::New();
WriterType::Pointer writer = WriterType::New();
reader->SetFileName(argv[1]);
writer->SetFileName(argv[2]);
// Software Guide : BeginLatex
//
// The input that is passed to the fuzzy segmentation filter is taken from
// the reader.
//
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetInput()}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
fuzzysegmenter->SetInput(reader->GetOutput());
// Software Guide : EndCodeSnippet
InputImageType::IndexType index;
index[0] = atoi(argv[3]);
index[1] = atoi(argv[4]);
const float mean = atof(argv[5]);
const float variance = atof(argv[6]);
const float meanTolerance = atof(argv[7]);
const float stdTolerance = atof(argv[8]);
// Software Guide : BeginLatex
//
// The parameters of the fuzzy segmentation filter are defined here. A seed
// point is provided with the method \code{SetObjectSeed()} in order to
// initialize the region to be grown. Estimated values for the mean and
// variance of the object intensities are also provided with the methods
// \code{SetMean()} and \code{SetVariance()}, respectively. A threshold
// value for generating the binary object is preset with the method
// \code{SetThreshold()}. For details describing the role of the mean and
// variance on the computation of the segmentation, please see
// \cite{Udupa1996}.
//
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetObjectSeed()}
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetMean()}
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetVariance()}
// \index{itk::Simple\-Fuzzy\-Connectedness\-Scalar\-Image\-Filter!SetThreshold()}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
fuzzysegmenter->SetObjectSeed(index);
fuzzysegmenter->SetMean(mean);
fuzzysegmenter->SetVariance(variance);
fuzzysegmenter->SetThreshold(0.5);
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The execution of the fuzzy segmentation filter is triggered by the
// \code{Update()} method.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
fuzzysegmenter->Update();
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The input to the Voronoi diagram classification filter is obtained from
// the reader and the prior is obtained from the fuzzy segmentation filter.
//
// \index{itk::VoronoiSegmentationImageFilter!SetInput()}
// \index{itk::VoronoiSegmentationImageFilter!TakeAPrior()}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
voronoisegmenter->SetInput(reader->GetOutput());
voronoisegmenter->TakeAPrior(fuzzysegmenter->GetOutput());
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The tolerance levels for testing the mean and standard deviation are set
// with the methods \code{SetMeanPercentError()} and
// \code{SetSTDPercentError()}. Note that the
// fuzzy segmentation filter uses \emph{variance} as parameter while
// the Voronoi segmentation filter uses the tolerance of the
// \emph{standard deviation} as a parameter. For more details on how these
// parameters should be selected, please see \cite{Imielinska2000b}.
//
// \index{itk::VoronoiSegmentationImageFilter!SetMeanPercentError()}
// \index{itk::VoronoiSegmentationImageFilter!SetSTDPercentError()}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
voronoisegmenter->SetMeanPercentError(meanTolerance);
voronoisegmenter->SetSTDPercentError(stdTolerance);
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The \emph{resolution} of the Voronoi diagram classification can be
// chosen with the method \code{SetMinRegion()}.
//
// \index{itk::VoronoiSegmentationImageFilter!SetMinRegion()}
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
voronoisegmenter->SetMinRegion(5);
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The execution of the Voronoi segmentation filter is triggered with the
// \code{Update()} method.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
voronoisegmenter->Update();
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The output of the Voronoi diagram classification is an image mask with
// zeros everywhere and ones inside the segmented object. This image will
// appear black on many image viewers since they do not usually stretch
// the gray levels. Here, we add a \doxygen{itk}{RescaleIntensityImageFilter}
// in order to expand the dynamic range to more typical values.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
typedef itk::RescaleIntensityImageFilter<OutputImageType, OutputImageType>
ScalerFilterType;
ScalerFilterType::Pointer scaler = ScalerFilterType::New();
scaler->SetOutputMinimum(0);
scaler->SetOutputMaximum(255);
scaler->SetInput(voronoisegmenter->GetOutput());
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// The output of the rescaler is passed to the writer. The invocation
// of the \code{Update()} method on the writer triggers the execution of
// the pipeline.
//
// Software Guide : EndLatex
// Software Guide : BeginCodeSnippet
writer->SetInput(scaler->GetOutput());
writer->Update();
// Software Guide : EndCodeSnippet
// Software Guide : BeginLatex
//
// We execute this program on the image \code{QB\_Suburb.png} available
// in the directory \code{Examples/Data}. The following parameters are
// passed to the command line:
//
// \small
// \begin{verbatim}
//HybridSegmentationFuzzyVoronoi QB_Suburb.png Output.png
// 111 38 75 20 0.5 2.0
// \end{verbatim}
// \normalsize
//
// $(111, 38)$ specifies the index position of a seed point in the image,
// while $75$ and $20$ are the estimated mean and standard deviation,
// respectively, of the object to be segmented. Finally, $0.5$ and $2.0$
// are the tolerance for the mean and standard deviation, respectively.
// Figure~\ref{fig:HybridSegmentationFuzzyVoronoiOutput} shows the input
// image and the binary mask resulting from the segmentation.
//
// Note that in order to successfully segment other images, these
// parameters have to be adjusted to reflect the data.
//
// Software Guide : EndLatex
return EXIT_SUCCESS;
}
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