PCAModel.h

#ifndef PCAModel_h
#define PCAModel_h

#include "otbMachineLearningModelTraits.h"
#include "otbMachineLearningModel.h"

#include <shark/Algorithms/Trainers/PCA.h>

namespace otb
{
template <class TInputValue>
class ITK_EXPORT PCAModel: public  MachineLearningModel<itk::VariableLengthVector< TInputValue> , itk::VariableLengthVector< TInputValue>>    
{

public:
	
	typedef PCAModel Self;
	typedef MachineLearningModel<itk::VariableLengthVector< TInputValue> , itk::VariableLengthVector< TInputValue>> Superclass;
	typedef itk::SmartPointer<Self> Pointer;
	typedef itk::SmartPointer<const Self> ConstPointer;

	typedef typename Superclass::InputValueType 			InputValueType;
	typedef typename Superclass::InputSampleType 			InputSampleType;
	typedef typename Superclass::InputListSampleType 		InputListSampleType;
	typedef typename InputListSampleType::Pointer 			ListSamplePointerType;
	typedef typename Superclass::TargetValueType 			TargetValueType;
	typedef typename Superclass::TargetSampleType 			TargetSampleType;
	typedef typename Superclass::TargetListSampleType 		TargetListSampleType;

	/// Confidence map related typedefs
	
	typedef typename Superclass::ConfidenceValueType  				ConfidenceValueType;
	typedef typename Superclass::ConfidenceSampleType 				ConfidenceSampleType;
	typedef typename Superclass::ConfidenceListSampleType      		ConfidenceListSampleType;


	itkNewMacro(Self);
	itkTypeMacro(PCAModel, DimensionalityReductionModel);

	unsigned int GetDimension() {return m_Dimension;}; 
	itkSetMacro(Dimension,unsigned int);
	
	itkSetMacro(Do_resize_flag,bool);
	
	bool CanReadFile(const std::string & filename);
	bool CanWriteFile(const std::string & filename);

	void Save(const std::string & filename, const std::string & name="")  ITK_OVERRIDE;
	void Load(const std::string & filename, const std::string & name="")  ITK_OVERRIDE;

	void Train() ITK_OVERRIDE;
	//void Dimensionality_reduction()  {}; // Dimensionality reduction is done by DoPredict
	 

protected:
	PCAModel();	
	~PCAModel() ITK_OVERRIDE;
 
	virtual TargetSampleType DoPredict(const InputSampleType& input, ConfidenceValueType * quality = ITK_NULLPTR) const;

	virtual void DoPredictBatch(const InputListSampleType *, const unsigned int & startIndex, const unsigned int & size, TargetListSampleType *, ConfidenceListSampleType * quality = ITK_NULLPTR) const ITK_OVERRIDE;
  
private:
	shark::LinearModel<> m_encoder;
	shark::LinearModel<> m_decoder;
	shark::PCA m_pca;
	unsigned int m_Dimension;
	bool m_Do_resize_flag;
};
} // end namespace otb


#ifndef OTB_MANUAL_INSTANTIATION
#include "PCAModel.txx"
#endif


#endif