.clang-format

+---
+AlignAfterOpenBracket: Align
+AlignConsecutiveAssignments: true
+AlignConsecutiveDeclarations: true
+AlignEscapedNewlinesLeft: true
+AlignOperands:   true
+AlignTrailingComments: true
+AllowShortBlocksOnASingleLine: false
+AllowShortCaseLabelsOnASingleLine: false
+AllowShortFunctionsOnASingleLine: false
+AllowShortIfStatementsOnASingleLine: false
+AllowShortLoopsOnASingleLine: false
+AlwaysBreakBeforeMultilineStrings: true
+AlwaysBreakTemplateDeclarations: true
+BreakBeforeBraces: Allman
+ColumnLimit:     160
+ConstructorInitializerAllOnOneLineOrOnePerLine: true
+ConstructorInitializerIndentWidth: 2
+Cpp11BracedListStyle: true
+DerivePointerAlignment: false
+IndentWidth:     2
+Language:        Cpp
+MaxEmptyLinesToKeep: 2
+NamespaceIndentation: None
+PointerAlignment: Left
+SortIncludes: false
+Standard:        Cpp11
+TabWidth:        2
+UseTab:          Never
+...

.editorconfig

+# http://EditorConfig.org
+
+# top-most EditorConfig file
+root = true
+
+# Apply to all code files
+[*]
+# A newline ending every file
+insert_final_newline = true
+
+# Set default charset
+charset = utf-8
+
+# 4 space indentation
+indent_style = space
+indent_size = 2
+
+# Various options
+trim_trailing_whitespace = true

.gitattributes

+Data/**/*.[0-9][0-9][0-9] filter=lfs diff=lfs merge=lfs -text
+Data/**/*.BIL filter=lfs diff=lfs merge=lfs -text
+Data/**/*.bsq filter=lfs diff=lfs merge=lfs -text
+Data/**/*.c[0-9] filter=lfs diff=lfs merge=lfs -text
+Data/**/*.c[0-9][0-9] filter=lfs diff=lfs merge=lfs -text
+Data/**/*.ci4 filter=lfs diff=lfs merge=lfs -text
+Data/**/*.cr4 filter=lfs diff=lfs merge=lfs -text
+Data/**/*.dat filter=lfs diff=lfs merge=lfs -text
+Data/**/*.dbf filter=lfs diff=lfs merge=lfs -text
+Data/**/*.grd filter=lfs diff=lfs merge=lfs -text
+Data/**/*.hdf filter=lfs diff=lfs merge=lfs -text
+Data/**/*.he5 filter=lfs diff=lfs merge=lfs -text
+Data/**/*.hgt filter=lfs diff=lfs merge=lfs -text
+Data/**/*.id filter=lfs diff=lfs merge=lfs -text
+Data/**/*.idx filter=lfs diff=lfs merge=lfs -text
+Data/**/*.ima filter=lfs diff=lfs merge=lfs -text
+Data/**/*.img filter=lfs diff=lfs merge=lfs -text
+Data/**/*.index filter=lfs diff=lfs merge=lfs -text
+Data/**/*.j2k filter=lfs diff=lfs merge=lfs -text
+Data/**/*.jp2 filter=lfs diff=lfs merge=lfs -text
+Data/**/*.jpeg filter=lfs diff=lfs merge=lfs -text
+Data/**/*.jpg filter=lfs diff=lfs merge=lfs -text
+Data/**/*.kmz filter=lfs diff=lfs merge=lfs -text
+Data/**/*.las filter=lfs diff=lfs merge=lfs -text
+Data/**/*.lum filter=lfs diff=lfs merge=lfs -text
+Data/**/*.map filter=lfs diff=lfs merge=lfs -text
+Data/**/*.mw filter=lfs diff=lfs merge=lfs -text
+Data/**/*.pack filter=lfs diff=lfs merge=lfs -text
+Data/**/*.pix filter=lfs diff=lfs merge=lfs -text
+Data/**/*.png filter=lfs diff=lfs merge=lfs -text
+Data/**/*.raw filter=lfs diff=lfs merge=lfs -text
+Data/**/*.shp filter=lfs diff=lfs merge=lfs -text
+Data/**/*.shx filter=lfs diff=lfs merge=lfs -text
+Data/**/*.sqlite filter=lfs diff=lfs merge=lfs -text
+# Data/**/*.tar filter=lfs diff=lfs merge=lfs -text
+Data/**/*.tif filter=lfs diff=lfs merge=lfs -text
+Data/**/*.TIF filter=lfs diff=lfs merge=lfs -text
+Data/**/*.tiff filter=lfs diff=lfs merge=lfs -text
+Data/**/*.tts filter=lfs diff=lfs merge=lfs -text

.gitignore

+syntax: glob
+*~
+.*.swp
+*.orig
+*.pyc
+.\#*
+\#*\#
+tags
+*vim*
+*.template
+archives*
+.vscode*
+CMakeLists.txt.user
+.directory*
+build_packages*
+build
+install
+log

.gitlab-ci.yml

+#
+# Copyright (C) 2005-2024 Centre National d'Etudes Spatiales (CNES)
+#
+# This file is part of Orfeo Toolbox
+#
+#     https://www.orfeo-toolbox.org/
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+# WARNING!
+# OTB uses Git-LFS to store the (large) tests data.
+# Git-LFS is mostly transparent for the user and recent versions
+# are able to use Git-LFS quite efficiently.
+# But Git fails to manage efficiently numerous LFS data.
+# We have to use directly git-lfs wrapping commands to have an
+# efficient cloning step.
+# Furthermore, Git-LFS and Gitlab sufer a bug preventing usage of
+# GIT_STRATEGY=fetch (https://gitlab.com/gitlab-org/gitlab-runner/issues/3318)
+
+variables:
+  BUILD_IMAGE_REGISTRY: $CI_REGISTRY/orfeotoolbox/otb-build-env
+  GIT_CLONE_PATH: $CI_BUILDS_DIR/otb
+  DOCKER_DRIVER: overlay2
+  GIT_DEPTH: "3"
+  # Disable automatic checkout to let us fetch LFS before
+  GIT_CHECKOUT: "false"
+  # The fetch strategy fails with LFS and GitLab
+  GIT_STRATEGY: "clone"
+  PACKAGE_OTB_VERSION: "latest"
+
+workflow:
+  rules:
+    - if: '$CI_PIPELINE_SOURCE == "merge_request_event"'
+    - if: '$CI_COMMIT_BRANCH && $CI_OPEN_MERGE_REQUESTS'
+      when: never
+    - if: '$CI_COMMIT_BRANCH'
+
+stages:
+  - precheck
+  - prepare
+  - build
+  - report
+  - deploy
+  - docker
+
+.general:
+  retry:
+    max: 2
+    when:
+      - runner_system_failure
+      - stuck_or_timeout_failure
+
+.common:
+  extends: .general
+  before_script:
+    # Provision efficiently the local LFS cache before checkout
+    - git lfs fetch origin $CI_COMMIT_SHA
+    - git checkout -f -q $CI_COMMIT_SHA
+  after_script:
+    - python3 -u CI/cdash_handler.py
+
+.common-build:
+  extends: .common
+  only:
+    - merge_requests
+    - develop
+    - /^release-[0-9]+\.[0-9]+$/
+  stage: build
+  artifacts:
+    when: always
+    expire_in: 24 hrs
+    paths:
+      - build/*/*.log #CMake log
+      - log/*.txt # Others
+      - CookBook-*-html.tar.gz
+      - CookBook-*.pdf
+      - OTB-Doxygen-*.tar.bz2
+      - OTB-*.tar.gz
+      - OTB-*.zip
+      - build/compile_commands.json
+      - build/ctest_report.xml
+      - build/cppcheck_report.xml
+      - build/coverage_report.xml
+      - build/Testing/Temporary/*.txt #DEBUG
+      - Docker/Dockerfile_CI
+      - Docker/system-dependencies.txt
+
+.common-prepare:
+  extends: .general
+  only:
+    - merge_requests
+    - develop
+    - /^release-[0-9]+\.[0-9]+$/
+  stage: prepare
+  before_script:
+    - export GIT_LFS_SKIP_SMUDGE=1
+    - git checkout -f -q $CI_COMMIT_SHA
+    - export GIT_LFS_SKIP_SMUDGE=0
+  artifacts:
+    expire_in: 24 hrs
+    when: always
+    paths:
+      - sb_branch.txt # Needed to checkout correct branch in build step
+      - build/*/*/*/*.log # Superbuild log
+      - build/*/*/*/*.cmake
+
+#-------------------------- precheck job ---------------------------------------
+fast-build:
+  extends: .common
+  only:
+    - merge_requests
+    - branches
+  stage: precheck
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-native-itk5:22.04
+  before_script:
+    - export GIT_LFS_SKIP_SMUDGE=1
+    - git checkout -f -q $CI_COMMIT_SHA
+    # pull data needed by the two convolution test
+    - |
+      git lfs pull --include Data/Baseline/OTB/Images/bfTvConvolutionImageFilter.tif
+      git lfs pull --include Data/Input/QB_Suburb.png
+      git lfs pull --include Data/Input/QB_PAN_ROI_1000_100.tif
+  script:
+    - ctest -V -S CI/main_ci.cmake -DIMAGE_NAME:string=ubuntu-22.04-fast
+    - ctest -VV -S CI/FFTW_tests.cmake -DIMAGE_NAME:string=ubuntu-22.04-fast
+    - ccache -s
+
+legal-check:
+  extends: .common
+  only:
+    - merge_requests
+    - develop
+    - /^release-[0-9]+\.[0-9]+$/
+  stage: precheck
+  image: $BUILD_IMAGE_REGISTRY/otb-alpine:3.7
+  variables:
+    GIT_DEPTH: ""
+  allow_failure: true
+  script:
+    - ./CI/contributors_check.sh
+    - ./CI/headers_check.py
+  after_script: []
+
+#------------------------- prepare & build jobs --------------------------------
+
+## Ubuntu superbuild
+ubuntu-22-prepare:
+  extends: .common-prepare
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-superbuild-base:22.04
+  script:
+    - ctest -VV -S CI/prepare_superbuild.cmake -DIMAGE_NAME:string=ubuntu-22.04-llvm-full -DOTB_FULL_BUILD:BOOL=ON
+
+ubuntu-24-prepare:
+  extends: .common-prepare
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-superbuild-base:24.04
+  script:
+    - ctest -VV -S CI/prepare_superbuild.cmake -DIMAGE_NAME:string=ubuntu-24.04-llvm-full
+  artifacts:
+    untracked: false
+    when: on_success
+    access: all
+    expire_in: 24hrs
+    paths:
+      - xdk/lib/python3/*
+
+ubuntu-22-build:
+  extends: .common-build
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-superbuild-base:22.04
+  script:
+    - ctest -V -S CI/main_superbuild.cmake -DIMAGE_NAME:string=ubuntu-22.04-llvm-xdk-full
+    - mv build/CookBook-*-html.tar.gz . || true
+    - mv build/Documentation/Cookbook/latex/CookBook-*.pdf . || true
+    - mv build/Documentation/Doxygen/OTB-Doxygen-*.tar.bz2 . || true
+    - ctest -V -S CI/superbuild_packaging.cmake -DIMAGE_NAME:string=ubuntu-22.04-llvm-xdk-full -DPACKAGE_BY_MODULE:BOOL=ON
+    - ctest -V -S CI/superbuild_packaging.cmake -DIMAGE_NAME:string=ubuntu-22.04-llvm-xdk-full -DPACKAGE_BY_MODULE:BOOL=OFF
+    - mv build_packages/OTB-*.tar.gz . || true
+  needs:
+    - job: ubuntu-22-prepare
+      artifacts: true
+
+# Ubuntu 24 build needed for gdal bindings with python 3.12. We package the compiled bindings for python 3.12, this package will be downloaded and extracted automatically when
+# a user lauches the otbenv profile after unpacking the official archive for the first time (which contains bindings for ubuntu 20 and python 3.8 initially)
+python3.12-gdal-bindings:
+  extends: .common-build
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-superbuild-base:24.04
+  only:
+    refs:
+      - /^release-[0-9]+\.[0-9]+$/
+  script:
+    - |
+      MAJOR_VERSION=$(egrep "set\(OTB_VERSION_MAJOR" < CMakeLists.txt | egrep -o "[0-9]+")
+      MINOR_VERSION=$(egrep "set\(OTB_VERSION_MINOR" < CMakeLists.txt | egrep -o "[0-9]+")
+      PATCH_VERSION=$(egrep "set\(OTB_VERSION_PATCH" < CMakeLists.txt | egrep -o "[0-9]+")
+      PACKAGE_OTB_VERSION="$MAJOR_VERSION.$MINOR_VERSION.$PATCH_VERSION"
+    - find xdk/lib/python3/dist-packages/osgeo/ -type f -name "*.so" -printf "%P\n" | tar -czf OTB-$PACKAGE_OTB_VERSION-GDAL-bindings-py312.tar.gz --no-recursion -C xdk/lib/python3/dist-packages/osgeo -T -
+  needs:
+    - job: ubuntu-24-prepare
+      artifacts: true
+ 
+## RedHat superbuild
+redhat-prepare:
+  extends: .common-prepare
+  image: $BUILD_IMAGE_REGISTRY/otb-redhat-superbuild-base:8
+  script:
+    - ctest -VV -S CI/prepare_superbuild.cmake -DIMAGE_NAME:string=redhat-8-gcc -DOTB_FULL_BUILD:BOOL=ON
+
+redhat-build:
+  extends: .common-build
+  image: $BUILD_IMAGE_REGISTRY/otb-redhat-superbuild-base:8
+  script:
+    - ctest -V -S CI/main_superbuild.cmake -DIMAGE_NAME:string=redhat-8-gcc
+    - ctest -V -S CI/superbuild_packaging.cmake -DIMAGE_NAME:string=redhat-8-gcc -DPACKAGE_BY_MODULE:BOOL=ON
+    - ctest -V -S CI/superbuild_packaging.cmake -DIMAGE_NAME:string=redhat-8-gcc -DPACKAGE_BY_MODULE:BOOL=OFF
+    # change package names to RedHat
+    - |
+      # use "find" to select only packages that matters
+      rh_packages=$(find build_packages -type f -name "OTB*Linux*.tar.gz")
+      for pkg in $rh_packages
+      do
+        new_name=$(sed "s/-Linux/-Linux_RedHat/g" <<< "$pkg")
+        mv $pkg $new_name
+      done
+    - mv build_packages/OTB-*.tar.gz . || true
+  needs:
+    - job: redhat-prepare
+      artifacts: true
+
+## Windows
+.windows-prepare:
+  extends: .common-prepare
+  before_script:
+# This override the previous before_script
+    - set GIT_LFS_SKIP_SMUDGE=1
+    - git checkout -f -q $CI_COMMIT_SHA
+    - set GIT_LFS_SKIP_SMUDGE=0
+
+.windows-build:
+  extends: .common-build
+  before_script:
+    - git lfs fetch origin $CI_COMMIT_SHA
+    - git checkout -f -q $CI_COMMIT_SHA
+  # Obviously Windows does not use same executable name as linux...
+  after_script:
+    # need to setup path to be able to use python
+    - .\CI\setup_python.ps1 x64
+    - python -u CI/cdash_handler.py
+
+# - Win10
+windows-10-prepare:
+  extends: .windows-prepare
+  tags:
+    - windows10
+  script:
+    - .\CI\dev_env.ps1 x64 xdk 10
+    - buildcache.exe -s
+    - ctest -C Release -VV -S CI/prepare_superbuild.cmake -DOTB_FULL_BUILD:BOOL=ON -DPython_ROOT_DIR:STRING="C:/tools/Python310-x64"
+    - buildcache.exe -s
+
+windows-10-build:
+  extends: .windows-build
+  tags:
+    - windows10
+  script:
+    - .\CI\dev_env.ps1 x64 otb 10
+    - buildcache.exe -s
+    - ctest -V -S CI/main_superbuild.cmake -DPython_ROOT_DIR:STRING="C:/tools/Python310-x64"
+    - buildcache.exe -s
+    - .\CI\copy_boost_dlls.ps1
+    - ctest -V -S CI/superbuild_packaging.cmake -DPACKAGE_BY_MODULE:BOOL=OFF
+    - move "build_packages\OTB-*.zip" . || dir build_packages
+  needs:
+    - job: windows-10-prepare
+      artifacts: true
+
+#------------------------- QA related jobs -------------------------------------
+ubuntu-qa-code-coverage:
+  extends: .common-build
+  only:
+    refs:
+      - merge_requests
+      - develop
+      - /^release-[0-9]+\.[0-9]+$/
+    variables:
+      - $SONAR_OTB_TOKEN
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-superbuild-qa:22.04
+  script:
+    - ctest -V -S CI/main_qa.cmake
+            -DIMAGE_NAME:string=ubuntu-22.04-llvm-qa
+            -DQA:BOOL=ON
+    - ./CI/otb_coverage.sh
+    - saxon-xslt -o build/ctest_report.xml
+                 build/Testing/`head -n 1 build/Testing/TAG`/Test.xml
+                 CI/ctest2junit.xsl
+  needs:
+    - job: ubuntu-22-prepare
+      artifacts: true
+
+ubuntu-qa-static-analysis:
+  extends: .common-build
+  only:
+    refs:
+      - merge_requests
+      - develop
+      - /^release-[0-9]+\.[0-9]+$/
+    variables:
+      - $SONAR_OTB_TOKEN
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-superbuild-qa:22.04
+  script:
+    - find Modules -type f -regextype posix-extended -regex '.*\.(h|hxx)$' -exec dirname '{}' \; |
+          grep -vE '^Modules/ThirdParty/' |
+          sort -u > header_directories
+    - cppcheck -j 8 -q --xml --xml-version=2 --enable=all
+               --language=c++ --std=c++14 --platform=unix64
+               --includes-file=header_directories
+               -i Modules/ThirdParty Modules
+               2> build/cppcheck_report.xml
+  after_script: []
+  needs:
+    - job: ubuntu-22-prepare
+      artifacts: true
+
+ubuntu-sonar-report:
+  extends: .common
+  variables:
+    GIT_DEPTH: ""
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-superbuild-qa:22.04
+  stage: report
+  only:
+    refs:
+      - merge_requests
+      - develop
+      - /^release-[0-9]+\.[0-9]+$/
+    variables:
+      - $SONAR_OTB_TOKEN
+  script:
+    - sonar-scanner -Dproject.settings=sonar-project.properties
+                    -Dsonar.host.url=https://sonar.orfeo-toolbox.org
+                    -Dsonar.login=$SONAR_OTB_TOKEN
+                    -Dsonar.projectKey=$CI_PROJECT_NAMESPACE-$CI_PROJECT_NAME
+                    `test -z "$CI_COMMIT_TAG" || echo "-Dsonar.projectVersion=$CI_COMMIT_TAG"`
+                    -Dsonar.branch.name=$CI_COMMIT_REF_NAME
+
+  after_script: []
+  needs:
+    - job: ubuntu-qa-code-coverage
+      artifacts: true
+    - job: ubuntu-qa-static-analysis
+      artifacts: true
+
+#---------------------------- Deploy job ---------------------------------------
+deploy:
+  tags:
+    - deploy
+  image: $BUILD_IMAGE_REGISTRY/otb-alpine:3.7
+  stage: deploy
+  extends: .general
+  only:
+    - develop@orfeotoolbox/otb
+    - /^release-[0-9]+\.[0-9]+$/
+  before_script:
+    # Provision efficiently the local LFS cache before checkout
+    - git lfs fetch origin $CI_COMMIT_SHA
+    - git checkout -f -q $CI_COMMIT_SHA
+  script:
+    - ./CI/deploy.sh $CI_COMMIT_REF_NAME $RC_NUMBER
+  needs:
+    - job: ubuntu-22-build
+      artifacts: true
+    - job: windows-10-build
+      artifacts: true
+    - job: redhat-build
+      artifacts: true
+
+update-archive:
+  tags:
+    - deploy
+  image: $BUILD_IMAGE_REGISTRY/otb-ubuntu-superbuild-base:22.04
+  stage: deploy
+  extends: .general
+  only:
+    - develop
+    - /^release-[0-9]+\.[0-9]+$/@orfeotoolbox/otb
+  before_script:
+    # Provision efficiently the local LFS cache before checkout
+    - git lfs fetch origin $CI_COMMIT_SHA
+    - git checkout -f -q $CI_COMMIT_SHA
+  script:
+    - ./CI/SuperbuildDownloadList.sh download build_archive
+    - ./CI/deploy-archive.sh build_archive
+  needs:
+    # don't push the archive if Superbuild was not successful
+    - job: ubuntu-22-prepare
+      artifacts: false
+
+
+# release-container:
+#   image: $BUILD_IMAGE_REGISTRY/otb-alpine:3.7
+#   stage: deploy
+#   extends: .general
+#   only:
+#     refs:
+#       - tags@orfeotoolbox/otb
+#     variables:
+#       - $CI_COMMIT_TAG =~ /^[0-9]+\.[0-9]+\.[0-9]+$/
+#   script:
+#     - curl --request POST
+#            --form token=$K8S_SECRET_RELEASE
+#            --form ref=master
+#            --form variables[OTB_TAG]=$CI_COMMIT_TAG
+#            https://gitlab.orfeo-toolbox.org/api/v4/projects/126/trigger/pipeline
+
+release-docker:
+  image:
+      name: gcr.io/kaniko-project/executor:debug
+      entrypoint: [""]
+  stage: docker
+  only:
+    refs:
+      - /^release-[0-9]+\.[0-9]+$/
+  needs:
+      - job: ubuntu-22-build
+        artifacts: true
+  script:
+      # to authenticate in docker hub, kaniko needs a config file located at
+      # /kaniko/.docker/config.json
+      - mkdir -p /kaniko/.docker || true
+      - echo "{\"auths\":{\"https://index.docker.io/v1/\":{\"auth\":\"$(printf "%s:%s" "${DOCKER_HUB_USER}" "${DOCKER_HUB_PWD}" | base64 | tr -d '\n')\"}}}" > /kaniko/.docker/config.json
+      - /kaniko/executor --cleanup
+                       --verbosity warn
+                       --context $CI_PROJECT_DIR
+                       --dockerfile $CI_PROJECT_DIR/Docker/Dockerfile_CI
+                       --destination orfeotoolbox/otb:$CI_COMMIT_TAG

.gitlab/issue_templates/bugs.md

+### Description
+
+Describe what happens and why you think it is a bug
+
+### Steps to reproduce
+
+Describe as precisely as possible how to reproduce the bug. Try to isolate a minimal number of steps. Also describe reproducibility (always, random ...).
+
+### Configuration information
+
+OS, OTB version or tag, information related to build (binaries, superbuild, system libs ...)
+
+/label ~bug

.gitlab/issue_templates/documentation_changes.md

+### Target documentation resources
+
+Can be a combination of CookBook, doxygen, blog, applications doc, websites
+
+### Change requested
+
+Describe precisely the changes that are required.
+
+/label ~documentation 

.gitlab/issue_templates/feature_request.md

+Short summary of the requested feature
+
+/label ~feature

.gitlab/issue_templates/release.md

+We are ready to release OTB version MAJOR.MINOR.PATCH. The following steps need to be done:
+
+## Release Candidate
+
+### 1. Branches
+
+* [ ] **(if major or minor release)** Feature freeze: [create the new release branch](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#create-release-branch)
+* [ ] **(if patch release)** Work on the already existing branch `release-MAJOR-MINOR`
+* [ ] Make sure the version number in `CMakeLists.txt` is MAJOR.MINOR.PATCH
+
+### 2. Housekeeping
+* [ ] In this story, make a list of blocking issues for the release (if any)
+* [ ] Update release notes (walk the GitLab MR merged history and log all improvements)
+* [ ] Update the date in RELEASE_NOTES.txt
+* [ ] Check [SonarQube](https://sonar.orfeo-toolbox.org/dashboard?id=orfeotoolbox-otb)
+* [ ] Run Debian [spelling](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#spelling-check) checker
+* [ ] Run shellcheck script from [OTB-Devutils/Scripts/](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-devutils/blob/master/Scripts/run_shellcheck.sh)
+* [ ] [Update translation](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#translation-for-monteverdi-mapla) for Monteverdi and Mapla
+* [ ] [Sanity check the binary packages](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#standalone-packages-sanity-check)
+    * [ ] Windows
+    * [ ] Linux
+    * [ ] QGIS plugin
+
+### 3. Actual release
+
+Once all blocking issues are closed, and the previous steps are done:
+* [ ] [Tag the release candidate](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#release-tag)
+* [ ] Update GIT_TAG for all official remote modules (if needed)
+
+### 4. Publish and plan next release
+* [ ]   [Prepare and upload source packages](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#prepare-and-upload-source-packages)
+* [ ]   [Promote staging packages](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#promote-staging-packages)
+* [ ]   [Update documentation](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#update-documentation)
+    * [ ] Cookbook
+    * [ ] Doxygen
+* [ ] [Update the SuperBuild archive](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#superbuild-archive)
+* [ ] Release Candidate announcement on the forum
+
+## Release
+
+### 1. Branches
+
+* [ ] Make sure the version number in `CMakeLists.txt` is MAJOR.MINOR.PATCH
+
+### 2. Housekeeping
+* [ ] In this story, make a list of blocking issues for the release (if any)
+* [ ] Fix compilation warnings on CI
+* [ ] Update release notes (walk the GitLab MR merged history and log all improvements)
+* [ ] Update the date in RELEASE_NOTES.txt
+* [ ] Check [SonarQube](https://sonar.orfeo-toolbox.org/dashboard?id=orfeotoolbox-otb)
+* [ ] Run Debian [spelling](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#spelling-check) checker
+* [ ] Run shellcheck script from [OTB-Devutils/Scripts/](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb-devutils/blob/master/Scripts/run_shellcheck.sh)
+* [ ] [Update translation](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#translation-for-monteverdi-mapla) for Monteverdi and Mapla
+* [ ] [Sanity check the binary packages](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#standalone-packages-sanity-check)
+    * [ ] Windows
+    * [ ] Linux
+    * [ ] QGIS plugin
+
+### 3. Actual release
+
+Once all blocking issues are closed, and the previous steps are done:
+* [ ] [Tag the release](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#release-tag)
+* [ ] **(if major or minor release)**: Merge the release into develop
+* [ ] **(if it's the latest release)**: Merge the release into master
+* [ ] **(if patch release)**: Backport fixes
+* [ ] Update GIT_TAG for all official remote modules (if needed)
+
+### 4. Publish and plan next release
+* [ ]   [Prepare and upload source packages](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#prepare-and-upload-source-packages)
+* [ ]   [Promote staging packages](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#promote-staging-packages)
+* [ ]   [Update documentation](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#update-documentation)
+    * [ ] Cookbook
+    * [ ] Doxygen
+    * [ ] WordPress page "Home" and "Download" pages
+* [ ] Add the release to "Releases" page of the project
+* [ ] [Update the SuperBuild archive](https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb/wikis/Help-for-release-actions#superbuild-archive)
+* [ ] Upload OTB source archive to [Zenodo](https://zenodo.org/) to create a unique Digital Object Identifier (DOI)
+* [ ] Release announcement
+    * [ ] On the [forum](https://forum.orfeo-toolbox.org/)
+    * [ ] On the [blog](https://www.orfeo-toolbox.org/blog/)
+* [ ] Update the Wikipedia page with the version number and release date (https://en.wikipedia.org/wiki/Orfeo_toolbox)
+* [ ] Forward announcement to news_item@osgeo.org ([OSGeo news](https://www.osgeo.org/foundation-news/))
+* [ ] Remove public branches related to MR or bugfix merged before the release
+
+/label ~story

.gitlab/issue_templates/request_for_comments.md

+### What changes will be made and why they would make a better Orfeo ToolBox?
+
+#### High level description
+
+#### Risks and benefits
+
+#### Alternatives for implementations
+
+### Who will be developing the proposed changes?
+

.gitlab/merge_request_templates/request_for_changes.md

+#### Summary
+
+Gives a short summary of the changes.
+
+#### Rationale
+
+Explain the rationale for the changes (possible link to a Request For Comments or to an issue).
+
+#### Implementation Details
+
+<!---
+##### Classes and files
+Give an overview of the implementation: main changes made to classes, files and modules. Do not paste complete diff, as it is available in the merge request already.
+-->
+
+<!--- 
+##### Applications
+Describe any changes made to existing applications, or new applications that have been added.
+-->
+
+<!---
+##### Tests
+Describe the testing strategy for new features. 
+- [ ] validated through ... unitary test
+-->
+
+<!---
+##### Documentation
+List or link documentation modifications that were made (doxygen, example, Software Guide, application documentation, CookBook).
+-->
+
+#### Additional notes
+
+<!--- List remaining open issues if any, and additional notes. -->
+
+#### Copyright
+
+The copyright owner is *COPYRIGHT OWNER (OR OWNER'S AGENT)* and has signed the ORFEO ToolBox Contributor License Agreement.
+
+<hr>
+
+***Check before merging:***
+
+- All discussions are resolved
+- At least 2 :thumbsup: votes from core developers, no :thumbsdown: vote.
+- The feature branch is (reasonably) up-to-date with the base branch
+- Dashboard is green
+- Copyright owner has signed the ORFEO ToolBox Contributor License Agreement
+- Optionally, run `git diff develop... -U0 --no-color | clang-format-diff.py -p1 -i` on latest changes and commit

.hgignore

-syntax: glob
-*~
-.*.swp
-*.orig
-*.pyc
-.\#*
-\#*\#
-tags
-*vim*
-*.template
-

.hgsigs

-68eebc1b170a636794feda66523e6c0135ebfef2 0 iEYEABECAAYFAkmvX3cACgkQwRJnCg+r8KFSCgCfVYSnx2ev+hIlpbM/arxzLVf3KvsAn3nqaJXaj62RcNUIjv+qcNWlJ5WG
-e0fdaae06d33190d9b17356c5d51f878fd8fa0b6 0 iEYEABECAAYFAkoNOJEACgkQwRJnCg+r8KHMrACeJMcezNBgXjfx57UNdd/WfXw8kf8An1VEqFVTeG/wUd6QiiVy2icgfLGl
-c07af3906a803b43018e1a7e15db5c11f54d14b4 0 iEYEABECAAYFAkw68W0ACgkQwRJnCg+r8KGhjgCfR4LL9xW8xYGFXWEpbxSSRsCFVhIAn2nPMTqZvUW0cQvU6pkJD1+eENNj

.mailmap

+Alexia Mondot <alexia.mondot@c-s.fr>
+Amit Kulkarni <amitkulz@gmail.com>
+Angelos Tzotsos <tzotsos@gmail.com>
+Antoine Regimbeau <antoine.regimbeau@c-s.fr>
+Antoine Regimbeau <antoine.regimbeau@c-s.fr>              aregimbe <antoine.regimbeau@c-s.fr>
+Antoine Regimbeau <antoine.regimbeau@c-s.fr>              aregimbeau <antoine.regimbeau@c-s.fr>
+Arnaud Jaen <arnaud.jaen@c-s.fr>
+Arthur Vincent <arthur.vincent@c-s.fr>
+Arthur Vincent <arthur.vincent@c-s.fr>                    Arthur Vincent <vincenta@cesbio.cnes.fr>
+Aurelien Bricier <aurelien.bricier@c-s.fr>
+Aurélie Emilien <aurelie.emilien@c-s.fr>
+Aurélie Emilien <aurelie.emilien@c-s.fr>                  Aurelie Emilien <aurelie.emilien@c-s.fr>
+Bas Couwenberg <sebastic@debian.org>
+Bas Couwenberg <sebastic@debian.org>                      Bas Couwenberg <sebastic@xs4all.nl>
+Brad Hards <bradh@frogmouth.net>
+Carole Amiot <carole.amiot@cnes.fr>
+Carole Amiot <carole.amiot@cnes.fr>                       Carole Amiot <carole.amiot@thales-services.fr>
+Caroline Ruffel <caroline.ruffel@c-s.fr>
+Charles Peyrega <charles.peyrega@c-s.fr>
+Chia Aik Song <crscas@nus.edu.sg>
+Christophe Palmann <christophe.palmann@c-s.fr>
+Conrad Bielski <conrad.bielski@yahoo.com>
+Cyrille Valladeau <cyrille.valladeau@c-s.fr>
+Cédric Traizet <cedric.traizet@c-s.fr>                    Cedric <cedric.traizet@c-s.fr>
+Cédric Traizet <cedric.traizet@c-s.fr>                    Cédric Traizet <cedric.traizet@csgroup.eu>
+Cédric Traizet <cedric.traizet@c-s.fr>                    Cédric Traizet <traizetc@cesbio.cnes.fr>
+Cédric Traizet <cedric.traizet@c-s.fr>                    Traizet Cedric <cedric.traizet@cesbio.cnes.fr>
+Cédric Traizet <cedric.traizet@c-s.fr>                    ctraizet <cedric.traizet@c-s.fr>
+Daniel McInerney <daniel.o.mcinerney@gmail.com>
+Daniel McInerney <daniel.o.mcinerney@gmail.com>           dmci <daniel.o.mcinerney@gmail.com>
+Daphne Deleflie <daphne.deleflie@thalesgroup.com>
+David Youssefi <david.youssefi@cnes.fr>
+Emmanuel Christophe <emmanuel.christophe@gmail.com>
+Emmanuel Christophe <emmanuel.christophe@gmail.com>       Emmanuel Christophe <emmanuel.christophe@nus.edu.sg>
+Emmanuel Christophe <emmanuel.christophe@gmail.com>       Emmanuel Christophe <emmanuel.christophe@orfeo-toolbox.org>
+Emmanuelle Sarrazin <emmanuelle.sarrazin@cnes.fr>
+Emmanuelle Sarrazin <emmanuelle.sarrazin@cnes.fr>         esarrazin <emmanuelle.sarrazin@cnes.fr>
+Emmanuelle Sarrazin <emmanuelle.sarrazin@cnes.fr>         sarrazin <emmanuelle.sarrazin@cnes.fr>
+Etienne Bougoin <etienne.bougoin@c-s.fr>
+Gaëlle Usseglio <gaelle.usseglio@cnes.fr>                 Gaëlle USSEGLIO <gaelle.usseglio@cnes.fr>
+Grégoire Mercier <gregoire.mercier@telecom-bretagne.eu>   Gregoire Mercier <gregoire.mercier@telecom-bretagne.eu>
+Guilhem Bonnefille <guilhem.bonnefille@c-s.fr>
+Guillaume Borrut <guillaume.borrut@c-s.fr>
+Guillaume Pasero <guillaume.pasero@c-s.fr>
+Guillaume Pernot <guillaume.pernot@c-s.fr>
+Guillaume Pernot <guillaume.pernot@c-s.fr>                gpernot <guillaume.pernot@c-s.fr>
+janestar <janestar92@163.com>
+Jee Roen <jeroen.staab@posteo.de>
+Jonathan Guinet <jonathan.guinet@c-s.fr>
+Jordi Inglada <jordi.inglada@cesbio.eu>
+Jordi Inglada <jordi.inglada@cesbio.eu>                   Jordi Inglada <jordi.inglada@cesbio.cnes.fr>
+Jordi Inglada <jordi.inglada@cesbio.eu>                   Jordi Inglada <jordi.inglada@orfeo-toolbox.org>
+Julie Brossard <julie.brossard@c-s.fr>
+Julien Malik <julien.malik@c-s.fr>
+Julien Malik <julien.malik@c-s.fr>                        Julien Malik <julien.malik@gmail.com>
+Julien Malik <julien.malik@c-s.fr>                        Julien Malik <julien.malik@orfeo-toolbox.org>
+Julien Michel <julien.michel@cnes.fr>
+Julien Michel <julien.michel@cnes.fr>                     Julien Michel <julien.michel@c-s.fr>
+Julien Michel <julien.michel@cnes.fr>                     Julien Michel <julien.michel@orfeo-toolbox.org>
+Julien Osman <julien.osman@csgroup.eu>                    Julien Osman <julien.osman@c-s.fr>
+Laurențiu Nicola <lnicola@dend.ro>                        Laurentiu Nicola <lnicola@dend.ro>
+Laurențiu Nicola <lnicola@dend.ro>                        Laurențiu Nicola <grayshade@gmail.com>
+Luc Hermitte <luc.hermitte@csgroup.eu>                    Luc Hermitte <luc.hermitte@cnes.fr>
+Luc Hermitte <luc.hermitte@csgroup.eu>                    Luc Hermitte <luc.hermitte@c-s.fr>
+Luc Hermitte <luc.hermitte@csgroup.eu>                    Luc Hermitte <9-lhermitte@users.noreply.gitlab.orfeo-toolbox.org>
+Ludovic Hussonnois <ludovic.hussonnois@c-s.fr>
+Manuel Grizonnet <manuel.grizonnet@cnes.fr>
+Manuel Grizonnet <manuel.grizonnet@cnes.fr>               Grizonnet Manuel <manuel.grizonnet@cnes.fr>
+Manuel Grizonnet <manuel.grizonnet@cnes.fr>               Manuel Grizonnet <manuel.grizonnet@gmail.com>
+Manuel Grizonnet <manuel.grizonnet@cnes.fr>               Manuel Grizonnet <manuel.grizonnet@orfeo-toolbox.org>
+Marina Bertolino <marina.bertolino@c-s.fr>
+Mathieu Deltorre <mathieu.deltorre@c-s.fr>
+Mickaël Savinaud <mickael.savinaud@c-s.fr>
+Mickaël Savinaud <mickael.savinaud@c-s.fr>                Mickael Savinaud <mickael.savinaud@c-s.fr>
+Mickaël Savinaud <mickael.savinaud@c-s.fr>                msavinaud <mickael.savinaud@c-s.fr>
+OTB Bot <otbbot@orfeo-toolbox.org>
+Otmane Lahlou <otmane.lahlou@c-s.fr>
+Patrick Imbo <patrick.imbo@c-s.fr>
+Rashad Kanavath <rashad.kanavath@c-s.fr>
+Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad Kanavath <mohammed.rashad-km@cnes.fr>
+Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad Kanavath <mohammedrashadkm@gmail.com>
+Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad Kanavath <rashad.kanavath.email.com>
+Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad Kanavath <rashad.kanvath@c-s.fr>
+Rashad Kanavath <rashad.kanavath@c-s.fr>                  Rashad M <rashad.kanavath@c-s.fr>
+Romain Garrigues <romain.garrigues@c-s.fr>
+Rosa Ruiloba <rosario.ruiloba@c-s.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     Remi Cresson <remi.cresson@irstea.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     Rémi <remi.cresson@teledetection.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     remi <remi.cresson@irstea.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     remi cresson <remi.cresson@teledetection.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     remicres <remi.cresson@teledetection.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     remi cresson <remi.cresson@inrae.fr>
+Rémi Cresson <remi.cresson@irstea.fr>                     Rémi <remi.cresson@inrae.fr>
+Sebastien Harasse <sebastien.harasse@c-s.fr>
+Stephane Albert <stephane.albert@c-s.fr>
+Stephane Albert <stephane.albert@c-s.fr>                  Stephane ALBERT <stephane.albert@c-s.fr>
+Stephane Albert <stephane.albert@c-s.fr>                  Stephane Albert <salbert@dora.si.c-s.fr>
+Sylvain Poulain <kikislater@users.noreply.github.com>     Sylvain POULAIN <kikislater@users.noreply.github.com>
+Sébastien Dinot <sebastien.dinot@c-s.fr>
+Sébastien Dinot <sebastien.dinot@c-s.fr>                  Achille Talon <atalon@dinot.net>
+Sébastien Dinot <sebastien.dinot@c-s.fr>                  Sebastien Dinot <sebastien.dinot@c-s.fr>
+Thomas Feuvrier <thomas.feuvrier@c-s.fr>
+Tishampati Dhar <devnull@localhost>
+Victor Poughon <victor.poughon@cnes.fr>
+Vincent Poulain <vincent.poulain@thalesgroup.com>
+Yannick Tanguy <yannick.tanguy@cnes.fr>                   Yannick TANGUY <tanguyy@visu01.sis.cnes.fr>
+Yannick Tanguy <yannick.tanguy@cnes.fr>                   Yannick TANGUY <yannick.tanguy@cnes.fr>
+Yannick Tanguy <yannick.tanguy@cnes.fr>                   ytanguy <yannick.tanguy@cnes.fr>
+Yin Tiangang <crsyt@nus.edu.sg>
+Thibaut ROMAIN <thibaut.romain@csgroup.eu>
+Tristan Laurent <tristan.laurent@csgroup.eu>

Applications/CMakeLists.txt

-include(OTBWrapperMacros)
-
-# This var will contain the list of all application name
-# usefull for batch testing
-set(OTB_APPLICATIONS_NAME_LIST "" CACHE STRING "List of all applications name" FORCE)
-mark_as_advanced(OTB_APPLICATIONS_NAME_LIST)
-
-add_subdirectory(CartographicDBValidation)
-add_subdirectory(ChangeDetection)
-add_subdirectory(Classification)
-add_subdirectory(DimensionalityReduction)
-add_subdirectory(DisparityMap)
-add_subdirectory(FeatureExtraction)
-add_subdirectory(Hyperspectral)
-add_subdirectory(Projections)
-add_subdirectory(Radiometry)
-add_subdirectory(Rasterization)
-add_subdirectory(Segmentation)
-add_subdirectory(Test)
-add_subdirectory(Utils)

Applications/CartographicDBValidation/CMakeLists.txt

-OTB_CREATE_APPLICATION(NAME           ComputePolylineFeatureFromImage
-                       SOURCES        otbComputePolylineFeatureFromImage.cxx
-                       LINK_LIBRARIES OTBBasicFilters OTBLearning)
-
-OTB_CREATE_APPLICATION(NAME           DSFuzzyModelEstimation
-                       SOURCES        otbDSFuzzyModelEstimation.cxx
-                       LINK_LIBRARIES OTBIO OTBFeatureExtraction OTBFuzzy)
-                       
-OTB_CREATE_APPLICATION(NAME           VectorDataDSValidation
-                       SOURCES        otbVectorDataDSValidation.cxx
-                       LINK_LIBRARIES OTBIO OTBFeatureExtraction OTBFuzzy)

Applications/CartographicDBValidation/otbComputePolylineFeatureFromImage.cxx

-/*=========================================================================
-
-  Program:   ORFEO Toolbox
-  Language:  C++
-  Date:      $Date$
-  Version:   $Revision$
-
-
-  Copyright (c) Centre National d'Etudes Spatiales. All rights reserved.
-  See OTBCopyright.txt for details.
-
-
-     This software is distributed WITHOUT ANY WARRANTY; without even
-     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-     PURPOSE.  See the above copyright notices for more information.
-
-=========================================================================*/
-#include <iostream>
-
-#include "otbVectorImage.h"
-
-#include "otbWrapperApplication.h"
-#include "otbWrapperApplicationFactory.h"
-
-
-#include "otbVectorData.h"
-#include "otbVectorDataFileReader.h"
-#include "otbVectorDataFileWriter.h"
-#include "itkPreOrderTreeIterator.h"
-
-#include "otbVectorDataIntoImageProjectionFilter.h"
-#include "otbVectorDataProjectionFilter.h"
-#include "otbVectorDataTransformFilter.h"
-#include "itkAffineTransform.h"
-
-#include "otbParserConditionDataNodeFeatureFunction.h"
-#include "otbNDVIDataNodeFeatureFunction.h"
-
-// Elevation handler
-#include "otbWrapperElevationParametersHandler.h"
-
-namespace otb
-{
-namespace Wrapper
-{
-
-class ComputePolylineFeatureFromImage: public Application
-{
-public:
-  /** Standard class typedefs. */
-  typedef ComputePolylineFeatureFromImage Self;
-  typedef Application Superclass;
-  typedef itk::SmartPointer<Self> Pointer;
-  typedef itk::SmartPointer<const Self> ConstPointer;
-  // Images
-  typedef FloatVectorImageType::PixelType PixelType;
-  typedef FloatVectorImageType ImageType;
-
-  // VectorData
-  typedef VectorData<> VectorDataType;
-  typedef VectorDataType::DataNodeType DataNodeType;
-  typedef DataNodeType::ValuePrecisionType PrecisionType;
-  typedef DataNodeType::PrecisionType CoordRepType;
-  typedef itk::PreOrderTreeIterator<VectorDataType::DataTreeType> TreeIteratorType;
-  typedef VectorDataIntoImageProjectionFilter<VectorDataType, ImageType> VectorDataIntoImageProjType;
-  typedef VectorDataProjectionFilter<VectorDataType, VectorDataType> VectorDataProjectionFilterType;
-
-  typedef ParserConditionDataNodeFeatureFunction<ImageType, CoordRepType, PrecisionType>
-      ParserConditionFeatureFunctionType;
-
-  /** Standard macro */
-  itkNewMacro(Self)
-;
-
-  itkTypeMacro(ComputePolylineFeatureFromImage, otb::Application)
-;
-
-private:
-  void DoInit()
-  {
-    SetName("ComputePolylineFeatureFromImage");
-    SetDescription("This application compute for each studied polyline, contained in the input VectorData, the choosen descriptors.");
-
-    SetDocName("Compute Polyline Feature From Image");
-    SetDocLongDescription("The first step in the classifier fusion based validation is to compute, for each studied polyline, the choosen descriptors. ");
-    SetDocLimitations("Since it does not rely on streaming process, take care of the size of input image before launching application.");
-    SetDocAuthors("OTB-Team");
-    SetDocSeeAlso(" ");
-    AddDocTag(Tags::FeatureExtraction);
-
-    AddParameter(ParameterType_InputImage, "in", "Input Image");
-    SetParameterDescription("in", "An image to compute the descriptors on.");
-
-    AddParameter(ParameterType_InputVectorData, "vd", "Vector Data");
-    SetParameterDescription("vd", "Vector data containing the polylines where the features will be computed.");
-
-    // Elevation
-    ElevationParametersHandler::AddElevationParameters(this, "elev");
-
-    AddParameter(ParameterType_String, "expr", "Feature expression");
-    SetParameterDescription("expr", "The feature formula (b1 < 0.3) where b1 is the standard name of input image first band");
-
-    AddParameter(ParameterType_String, "field", "Feature name");
-    SetParameterDescription("field", "The field name corresponding to the feature codename (NONDVI, ROADSA...)");
-
-    AddParameter(ParameterType_OutputVectorData, "out", "Output Vector Data");
-    SetParameterDescription("out", "The output vector data containing polylines with a new field");
-
-    // Doc example parameter settings
-    SetDocExampleParameterValue("in", "NDVI.TIF");
-    SetDocExampleParameterValue("vd", "roads_ground_truth.shp");
-    SetDocExampleParameterValue("expr", "\"(b1 > 0.4)\"");
-    SetDocExampleParameterValue("field", "NONDVI");
-    SetDocExampleParameterValue("out", "PolylineFeatureFromImage_LI_NONDVI_gt.shp");
-  }
-
-  void DoUpdateParameters()
-  {
-    // Nothing to do here : all parameters are independent
-  }
-
-  void DoExecute()
-  {
-    // Vector Data into Image projection
-    FloatVectorImageType::Pointer inImage = GetParameterImage("in");
-
-    inImage->UpdateOutputInformation();
-    try
-      {
-      inImage->Update();
-      }
-    catch (...)
-      {
-      itkGenericExceptionMacro(<< "Error during image update, maybe your image is to big.");
-      }
-
-    otbAppLogDEBUG( << "Starting PolylineFeature extraction process" )
-
-    // Vector Data into Image projection
-    //// Read the Vectordata
-
-    VectorDataType* inVectorData = GetParameterVectorData("vd");
-    inVectorData->Update();
-    //// Projection
-    VectorDataIntoImageProjType::Pointer vprojIm = VectorDataIntoImageProjType::New();
-    vprojIm->SetInputVectorData(inVectorData);
-    vprojIm->SetInputImage(inImage);
-
-    // Elevation through the elevation handler
-    if (ElevationParametersHandler::IsElevationEnabled(this, "elev"))
-      {
-      switch(ElevationParametersHandler::GetElevationType(this, "elev"))
-        {
-        case Elevation_DEM:
-        {
-        vprojIm->SetDEMDirectory(ElevationParametersHandler::GetDEMDirectory(this, "elev"));
-        vprojIm->SetGeoidFile(ElevationParametersHandler::GetGeoidFile(this, "elev"));
-        }
-        break;
-        case Elevation_Average:
-        {
-        vprojIm->SetAverageElevation(ElevationParametersHandler::GetAverageElevation(this, "elev"));
-        }
-        break;
-        //   Commented cause using a tiff file is not implemented yet
-        //  case Elevation_Tiff:
-        //  {
-        //  }
-        //  break;
-        }
-      }
-
-    vprojIm->SetUseOutputSpacingAndOriginFromImage(true); // we want index as input;
-    vprojIm->Update();
-
-    // Add description
-    ParserConditionFeatureFunctionType::Pointer vdescriptor = ParserConditionFeatureFunctionType::New();
-    vdescriptor->SetExpression(GetParameterString("expr"));
-    vdescriptor->SetInputImage(inImage);
-
-    m_OutVectorData = VectorDataType::New();
-    // Retrieving root node
-    DataNodeType::Pointer root = m_OutVectorData->GetDataTree()->GetRoot()->Get();
-    // Create the document node
-    DataNodeType::Pointer document = DataNodeType::New();
-    document->SetNodeType(otb::DOCUMENT);
-    // Adding the layer to the data tree
-    m_OutVectorData->GetDataTree()->Add(document, root);
-    // Create the folder node
-    DataNodeType::Pointer folder = DataNodeType::New();
-    folder->SetNodeType(otb::FOLDER);
-    // Adding the layer to the data tree
-    m_OutVectorData->GetDataTree()->Add(folder, document);
-
-    TreeIteratorType itVector(vprojIm->GetOutput()->GetDataTree());
-    itVector.GoToBegin();
-
-    while (!itVector.IsAtEnd())
-      {
-      vdescriptor->SetInputImage(inImage);
-      if (!itVector.Get()->IsRoot() && !itVector.Get()->IsDocument() && !itVector.Get()->IsFolder())
-        {
-        DataNodeType::Pointer currentGeometry = itVector.Get();
-        currentGeometry->SetFieldAsDouble(GetParameterString("field"),
-                                          (double) (vdescriptor->Evaluate(*(currentGeometry.GetPointer()))[0]));
-        m_OutVectorData->GetDataTree()->Add(currentGeometry, folder);
-        }
-      ++itVector;
-      }
-
-    /*
-     * Reprojection of the output VectorData
-     *
-     * The output of VectorDataToRoadDescription is in image index coordinates
-     *
-     * 3 cases :
-     * - input image has no geo-information : pass through
-     * - input image is in cartographic projection : apply image spacing and origin, and set the ProjectionRef
-     * - input image is in sensor model geometry : reproject in WGS84
-     *
-     */
-
-    std::string projRef = inImage->GetProjectionRef();
-    ImageKeywordlist kwl;
-    itk::ExposeMetaData<ImageKeywordlist>(inImage->GetMetaDataDictionary(), MetaDataKey::OSSIMKeywordlistKey, kwl);
-
-    if (!projRef.empty())
-      {
-      // image is in cartographic projection
-      // apply spacing and origin + set projection WKT
-      // The VectorData in output of the chain is in image index coordinate,
-      // and the projection information is lost
-      // Apply an affine transform to apply image origin and spacing,
-      // and arbitrarily set the ProjectionRef to the input image ProjectionRef
-
-      typedef itk::AffineTransform<VectorDataType::PrecisionType, 2> TransformType;
-      typedef otb::VectorDataTransformFilter<VectorDataType, VectorDataType> VDTransformType;
-
-      TransformType::ParametersType params;
-      params.SetSize(6);
-      params[0] = inImage->GetSpacing()[0];
-      params[1] = 0;
-      params[2] = 0;
-      params[3] = inImage->GetSpacing()[1];
-      params[4] = inImage->GetOrigin()[0];
-      params[5] = inImage->GetOrigin()[1];
-
-      TransformType::Pointer transform = TransformType::New();
-      transform->SetParameters(params);
-
-      VDTransformType::Pointer vdTransform = VDTransformType::New();
-      vdTransform->SetTransform(transform);
-      vdTransform->SetInput(m_OutVectorData);
-      vdTransform->Update();
-
-      m_ProjectedVectorData = vdTransform->GetOutput();
-
-      m_ProjectedVectorData->SetProjectionRef(inImage->GetProjectionRef());
-      }
-    else
-      if (kwl.GetSize() > 0)
-        {
-        // image is in sensor model geometry
-
-        // Reproject VectorData in image projection
-        VectorDataProjectionFilterType::Pointer vproj = VectorDataProjectionFilterType::New();
-        vproj->SetInput(m_OutVectorData);
-
-        vproj->SetOutputKeywordList(inImage->GetImageKeywordlist());
-        vproj->SetOutputProjectionRef(inImage->GetProjectionRef());
-        vproj->SetOutputOrigin(inImage->GetOrigin());
-        vproj->SetOutputSpacing(inImage->GetSpacing());
-
-        // Elevation through the elevation handler
-        switch(ElevationParametersHandler::GetElevationType(this, "elev"))
-          {
-          case Elevation_DEM:
-          {
-          vproj->SetDEMDirectory(ElevationParametersHandler::GetDEMDirectory(this, "elev"));
-          vproj->SetGeoidFile(ElevationParametersHandler::GetGeoidFile(this, "elev"));
-          }
-          break;
-          case Elevation_Average:
-          {
-          vproj->SetAverageElevation(ElevationParametersHandler::GetAverageElevation(this, "elev"));
-          }
-          break;
-          //   Commented cause using a tiff file is not implemented yet
-          //  case Elevation_Tiff:
-          //  {
-          //  }
-          //  break;
-          }
-
-        vproj->Update();
-        m_ProjectedVectorData = vproj->GetOutput();
-        }
-      else
-        {
-        // no georeferencing information
-        m_ProjectedVectorData = m_OutVectorData;
-        }
-
-    // Set the output vectorData
-    SetParameterOutputVectorData("out", m_ProjectedVectorData);
-
-  };
-
-  VectorDataType::Pointer m_ProjectedVectorData;
-  VectorDataType::Pointer m_OutVectorData;
-
-};
-
-}
-}
-
-OTB_APPLICATION_EXPORT(otb::Wrapper::ComputePolylineFeatureFromImage)
-
-

Applications/CartographicDBValidation/otbDSFuzzyModelEstimation.cxx

-/*=========================================================================
-
-  Program:   ORFEO Toolbox
-  Language:  C++
-  Date:      $Date$
-  Version:   $Revision$
-
-
-  Copyright (c) Centre National d'Etudes Spatiales. All rights reserved.
-  See OTBCopyright.txt for details.
-
-
-     This software is distributed WITHOUT ANY WARRANTY; without even
-     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-     PURPOSE.  See the above copyright notices for more information.
-
-=========================================================================*/
-
-#include <iostream>
-
-#include "otbWrapperApplication.h"
-#include "otbWrapperApplicationFactory.h"
-#include "otbWrapperStringListParameter.h"
-#include "otbVectorData.h"
-#include "otbImageToEnvelopeVectorDataFilter.h"
-#include "otbVectorDataToRandomLineGenerator.h"
-#include "itkAmoebaOptimizer.h"
-#include "otbVectorDataToDSValidatedVectorDataFilter.h"
-#include "otbStandardDSCostFunction.h"
-#include "otbFuzzyDescriptorsModelManager.h"
-
-
-namespace otb
-{
-
-namespace Wrapper
-{
-
-#include "itkCommand.h"
-class CommandIterationUpdate : public itk::Command
-{
-public:
-typedef  CommandIterationUpdate   Self;
-typedef  itk::Command             Superclass;
-typedef itk::SmartPointer<Self>   Pointer;
-itkNewMacro( Self );
-protected:
-CommandIterationUpdate() {};
-public:
-typedef itk::AmoebaOptimizer         OptimizerType;
-typedef   const OptimizerType   *    OptimizerPointer;
-
-
-void Execute(itk::Object *caller, const itk::EventObject & event)
-{
-  Execute( (const itk::Object *)caller, event);
-}
-
-void Execute(const itk::Object * object, const itk::EventObject & event)
-{
-  OptimizerPointer optimizer =
-      dynamic_cast< OptimizerPointer >( object );
-  if( ! itk::IterationEvent().CheckEvent( &event ) )
-    {
-    return;
-    }
-  std::ostringstream message;
-  message << optimizer->GetCachedValue() << "   ";
-  message << optimizer->GetCachedCurrentPosition() << std::endl;
-  std::cout<<message.str()<<std::endl;
-}
-
-
-};
-
-
-class DSFuzzyModelEstimation: public Application
-{
-public:
-  /** Standard class typedefs. */
-  typedef DSFuzzyModelEstimation Self;
-  typedef Application Superclass;
-  typedef itk::SmartPointer<Self> Pointer;
-  typedef itk::SmartPointer<const Self> ConstPointer;
-
-  typedef VectorData<double>                          VectorDataType;
-
-  typedef VectorDataType::DataTreeType                DataTreeType;
-  typedef VectorDataType::DataNodeType                DataNodeType;
-
-  typedef VectorDataType::ValuePrecisionType          PrecisionType;
-  typedef VectorDataType::PrecisionType               CoordRepType;
-
-  typedef otb::Wrapper::StringListParameter::StringListType         StringListType;
-
-  typedef otb::VectorDataToDSValidatedVectorDataFilter<VectorDataType, PrecisionType>
-                                                            ValidationFilterType;
-  typedef otb::StandardDSCostFunction<ValidationFilterType> CostFunctionType;
-  typedef CostFunctionType::LabelSetType                    LabelSetType;
-
-  typedef itk::AmoebaOptimizer                            OptimizerType;
-
-  typedef otb::FuzzyDescriptorsModelManager::DescriptorsModelType
-                                                          DescriptorsModelType;
-  typedef otb::FuzzyDescriptorsModelManager::DescriptorListType
-                                                          DescriptorListType;
-
-     typedef itk::PreOrderTreeIterator<VectorDataType::DataTreeType>
-     TreeIteratorType;
-
-
-  /** Standard macro */
-  itkNewMacro(Self);
-
-  itkTypeMacro(DSFuzzyModelEstimation, otb::Application);
-
-private:
-  void DoInit()
-  {
-    SetName("DSFuzzyModelEstimation");
-    SetDescription("Estimate feature fuzzy model parameters using 2 vector data (ground truth samples and wrong samples).");
-
-    SetDocName("Fuzzy Model estimation");
-    SetDocLongDescription("Estimate feature fuzzy model parameters using 2 vector data (ground truth samples and wrong samples).");
-    SetDocLimitations("None.");
-    SetDocAuthors("OTB-Team");
-    SetDocSeeAlso(" ");
-  
-    AddDocTag(Tags::FeatureExtraction);
-
-    AddParameter(ParameterType_InputVectorData, "psin", "Input Positive Vector Data");
-    SetParameterDescription("psin", "Ground truth vector data for positive samples");
-
-    AddParameter(ParameterType_InputVectorData, "nsin", "Input Negative Vector Data");
-    SetParameterDescription("nsin", "Ground truth vector data for negative samples");
-
-    AddParameter(ParameterType_StringList, "belsup", "Belief Support");
-    SetParameterDescription("belsup", "Dempster Shafer study hypothesis to compute belief");
-
-    AddParameter(ParameterType_StringList, "plasup", "Plausibility Support");
-    SetParameterDescription("plasup", "Dempster Shafer study hypothesis to compute plausibility");
-
-    AddParameter(ParameterType_String, "cri", "Criterion");
-    SetParameterDescription("cri", "Dempster Shafer criterion (by default (belief+plausibility)/2)");
-    MandatoryOff("cri");
-    SetParameterString("cri","((Belief + Plausibility)/2.)");
-
-    AddParameter(ParameterType_Float,"wgt","Weighting");
-    SetParameterDescription("wgt","Coefficient between 0 and 1 to promote undetection or false detections (default 0.5)");
-    MandatoryOff("wgt");
-    SetParameterFloat("wgt", 0.5);
-
-    AddParameter(ParameterType_InputFilename,"initmod","initialization model");
-    SetParameterDescription("initmod","Initialization model (xml file) to be used. If the xml initialization model is set, the descriptor list is not used (specified using the option -desclist)");
-    MandatoryOff("initmod");
-
-    AddParameter(ParameterType_StringList, "desclist","Descriptor list");
-    SetParameterDescription("desclist","List of the descriptors to be used in the model (must be specified to perform an automatic initialization)");
-    MandatoryOff("desclist");
-    SetParameterString("desclist","");
-
-    AddParameter(ParameterType_Int,"maxnbit","Maximum number of iterations");
-    MandatoryOff("maxnbit");
-    SetParameterDescription("maxnbit","Maximum number of optimizer iteration (default 200)");
-    SetParameterInt("maxnbit", 200);
-
-    AddParameter(ParameterType_Empty,"optobs","Optimizer Observer");
-    SetParameterDescription("optobs","Activate the optimizer observer");
-    MandatoryOff("optobs");
-
-    AddParameter(ParameterType_OutputFilename,"out","Output filename");
-    SetParameterDescription("out","Output model file name (xml file) contains the optimal model to perform informations fusion.");
-
-    // Doc example parameter settings
-    SetDocExampleParameterValue("psin", "cdbTvComputePolylineFeatureFromImage_LI_NOBUIL_gt.shp");
-    SetDocExampleParameterValue("nsin", "cdbTvComputePolylineFeatureFromImage_LI_NOBUIL_wr.shp");
-    SetDocExampleParameterValue("belsup", "\"ROADSA\"");
-    SetDocExampleParameterValue("plasup", "\"NONDVI\" \"ROADSA\" \"NOBUIL\"");
-    SetDocExampleParameterValue("initmod", "Dempster-Shafer/DSFuzzyModel_Init.xml");
-    SetDocExampleParameterValue("maxnbit", "4");
-    SetDocExampleParameterValue("optobs", "true");
-    SetDocExampleParameterValue("out", "DSFuzzyModelEstimation.xml");
-  }
-
-  void DoUpdateParameters()
-  {
-    // Nothing to do here : all parameters are independent
-
-
-    // .. //
-
-
-  }
-
-  void DoExecute()
-  {
-
-    //Instantiate
-    m_CostFunction = CostFunctionType::New();
-    m_Optimizer = OptimizerType::New();
-
-    //Read the vector datas
-    VectorDataType::Pointer psVectorData = GetParameterVectorData("psin");
-    psVectorData->Update();
-    VectorDataType::Pointer nsVectorData = GetParameterVectorData("psin");
-    nsVectorData->Update();
-
-    // Load the initial descriptor model
-    DescriptorListType descList;
-    DescriptorsModelType descMod;
-    if (IsParameterEnabled("initmod"))
-      {
-      std::string descModFile = GetParameterString("initmod");
-      descMod = FuzzyDescriptorsModelManager::Read(descModFile.c_str());
-      descList = FuzzyDescriptorsModelManager::GetDescriptorList(descMod);
-      }
-    else
-      {
-      StringListType stringList = GetParameterStringList("desclist");
-      int nbsdDesc = stringList.size();
-      for (int i = 0; i < nbsdDesc; i++)
-        {
-        descList.push_back(stringList[i]);
-        }
-      }
-
-    m_CostFunction->SetDescriptorList(descList);
-
-    // Compute statistics of all the descriptors
-
-    std::vector<double> accFirstOrderPS, accSecondOrderPS, minPS, maxPS;
-    accFirstOrderPS.resize(descList.size());
-    accSecondOrderPS.resize(descList.size());
-    std::fill(accFirstOrderPS.begin(), accFirstOrderPS.end(), 0);
-    std::fill(accSecondOrderPS.begin(), accSecondOrderPS.end(), 0);
-    minPS.resize(descList.size());
-    maxPS.resize(descList.size());
-    unsigned int accNbElemPS = 0;
-
-    TreeIteratorType itVectorPS(psVectorData->GetDataTree());
-    for (itVectorPS.GoToBegin(); !itVectorPS.IsAtEnd(); ++itVectorPS)
-      {
-      if (!itVectorPS.Get()->IsRoot() && !itVectorPS.Get()->IsDocument() && !itVectorPS.Get()->IsFolder())
-        {
-        DataNodeType::Pointer currentGeometry = itVectorPS.Get();
-
-        for (unsigned int i = 0; i < descList.size(); ++i)
-          {
-          double desc = currentGeometry->GetFieldAsDouble(descList[i]);
-
-          accFirstOrderPS[i] += desc;
-          accSecondOrderPS[i] += desc * desc;
-
-          if (desc < minPS[i])
-            {
-            minPS[i] = desc;
-            }
-          if (desc > maxPS[i])
-            {
-            maxPS[i] = desc;
-            }
-
-          }
-        accNbElemPS++;
-        }
-      }
-
-    TreeIteratorType itVectorNS(nsVectorData->GetDataTree());
-    std::vector<double> accFirstOrderNS, accSecondOrderNS, minNS, maxNS;
-    minNS.resize(descList.size());
-    maxNS.resize(descList.size());
-    accFirstOrderNS.resize(descList.size());
-    accSecondOrderNS.resize(descList.size());
-    std::fill(accFirstOrderNS.begin(), accFirstOrderNS.end(), 0);
-    std::fill(accSecondOrderNS.begin(), accSecondOrderNS.end(), 0);
-    std::fill(minNS.begin(), minNS.end(), 1);
-    std::fill(maxNS.begin(), maxNS.end(), 0);
-    unsigned int accNbElemNS = 0;
-
-    for (itVectorNS.GoToBegin(); !itVectorNS.IsAtEnd(); ++itVectorNS)
-      {
-      if (!itVectorNS.Get()->IsRoot() && !itVectorNS.Get()->IsDocument() && !itVectorNS.Get()->IsFolder())
-        {
-        DataNodeType::Pointer currentGeometry = itVectorNS.Get();
-
-        for (unsigned int i = 0; i < descList.size(); ++i)
-          {
-          double desc = currentGeometry->GetFieldAsDouble(descList[i]);
-
-          accFirstOrderNS[i] += desc;
-          accSecondOrderNS[i] += desc * desc;
-
-          if (desc < minNS[i])
-            {
-            minNS[i] = desc;
-            }
-          if (desc > maxNS[i])
-            {
-            maxNS[i] = desc;
-            }
-
-          }
-        accNbElemNS++;
-        }
-      }
-    otbAppLogINFO( << "Descriptors Stats : ");
-    otbAppLogINFO( << "Positive Samples");
-    for (unsigned int i = 0; i < descList.size(); ++i)
-      {
-      double mean = accFirstOrderPS[i] / accNbElemPS;
-      double stddev = vcl_sqrt(accSecondOrderPS[i] / accNbElemPS - mean * mean);
-      otbAppLogINFO( << descList[i] << "  :  " << mean << " +/- " << stddev << "  (min: " << minPS[i] << "  max: " << maxPS[i] << ")"<< std::endl);
-      }
-
-    otbAppLogINFO( << "Negative Samples" << std::endl);
-    for (unsigned int i = 0; i < descList.size(); ++i)
-      {
-      double mean = accFirstOrderNS[i] / accNbElemNS;
-      double stddev = vcl_sqrt(accSecondOrderNS[i] / accNbElemNS - mean * mean);
-      otbAppLogINFO(<< descList[i] << "  :  " << mean << " +/- " << stddev << "  (min: " << minNS[i] << "  max: " << maxNS[i] << ")"<< std::endl);
-      }
-
-    OptimizerType::ParametersType initialPosition(4 * descList.size());
-
-    if (IsParameterEnabled("initmod"))
-      {
-
-      for (unsigned int i = 0; i < 4; i++)
-        {
-        for (unsigned int j = 0; j < descList.size(); j++)
-          {
-          initialPosition.SetElement(
-                                     i + 4 * j,
-                                     otb::FuzzyDescriptorsModelManager::GetDescriptor(descList[j].c_str(), descMod).second[i]);
-          }
-        }
-      }
-    else
-      {
-      for (unsigned int j = 0; j < descList.size(); j++)
-        {
-        initialPosition.SetElement((j * 4), std::min(minNS[j], maxPS[j]));
-        initialPosition.SetElement((j * 4) + 2, std::max(minNS[j], maxPS[j]));
-        initialPosition.SetElement(
-                                   (j * 4) + 1,
-                                       0.5
-                                       * (initialPosition.GetElement((j * 4)) + initialPosition.GetElement((j * 4) + 2)));
-        initialPosition.SetElement((j * 4) + 3, 0.95);
-        }
-      }
-
-    //Cost Function
-    //Format Hypothesis
-    LabelSetType Bhyp, Phyp;
-    int nbSet;
-
-    StringListType stringList = GetParameterStringList("belsup");
-    nbSet = stringList.size();
-
-    for (int i = 0; i < nbSet; i++)
-      {
-      std::string str = stringList[i];
-      Bhyp.insert(str);
-      }
-    m_CostFunction->SetBeliefHypothesis(Bhyp);
-    stringList = GetParameterStringList("plasup");
-    nbSet = stringList.size();
-    for (int i = 0; i < nbSet; i++)
-      {
-      std::string str = stringList[i];
-      Phyp.insert(str);
-      }
-    m_CostFunction->SetPlausibilityHypothesis(Phyp);
-
-    m_CostFunction->SetWeight(GetParameterFloat("wgt"));
-
-    m_CostFunction->SetCriterionFormula(GetParameterString("cri"));
-
-    m_CostFunction->SetGTVectorData(psVectorData);
-    m_CostFunction->SetNSVectorData(nsVectorData);
-    //Optimizer
-    m_Optimizer->SetCostFunction(m_CostFunction);
-
-    m_Optimizer->SetMaximumNumberOfIterations(GetParameterInt("maxnbit"));
-
-    OptimizerType::ParametersType simplexDelta(m_CostFunction->GetNumberOfParameters());
-    simplexDelta.Fill(0.1);
-
-    m_Optimizer->AutomaticInitialSimplexOff();
-    m_Optimizer->SetInitialSimplexDelta(simplexDelta);
-
-    m_Optimizer->SetInitialPosition(initialPosition);
-
-    // Create the Command observer and register it with the optimizer.
-    CommandIterationUpdate::Pointer observer = CommandIterationUpdate::New();
-    if (IsParameterEnabled("optobs"))
-      {
-      m_Optimizer->AddObserver(itk::IterationEvent(), observer);
-      }
-
-    try
-      {
-      // do the optimization
-      m_Optimizer->StartOptimization();
-      }
-    catch (itk::ExceptionObject& err)
-      {
-      // An error has occurred in the optimization.
-      // Update the parameters
-      otbAppLogFATAL("ERROR: Exception Catched!" << std::endl);
-      otbAppLogFATAL(<< err.GetDescription() << std::endl);
-      const unsigned int numberOfIterations = m_Optimizer->GetOptimizer()->get_num_evaluations();
-      otbAppLogFATAL("numberOfIterations : " << numberOfIterations << std::endl);
-      otbAppLogFATAL("Results : " << m_Optimizer->GetCurrentPosition() << std::endl);
-      }
-    // get the results
-    const unsigned int numberOfIterations = m_Optimizer->GetOptimizer()->get_num_evaluations();
-    otbAppLogFATAL("numberOfIterations : " << numberOfIterations << std::endl);
-    otbAppLogFATAL("Results : " << m_Optimizer->GetCurrentPosition() << std::endl);
-
-    for (unsigned int i = 0; i < descList.size(); i++)
-      {
-      otb::FuzzyDescriptorsModelManager::ParameterType tmpParams;
-      for (unsigned int j = 0; j < 4; j++)
-        {
-        tmpParams.push_back(m_Optimizer->GetCurrentPosition()[(i * 4) + j]);
-        }
-      otb::FuzzyDescriptorsModelManager::AddDescriptor(descList[i], tmpParams, m_Model);
-      }
-    otb::FuzzyDescriptorsModelManager::Save(GetParameterString("out"), m_Model);
-
-  };
-
-  CostFunctionType::Pointer                               m_CostFunction;
-  OptimizerType::Pointer                                  m_Optimizer;
-  otb::FuzzyDescriptorsModelManager::DescriptorsModelType m_Model;
-};
-
-}
-}
-
-OTB_APPLICATION_EXPORT(otb::Wrapper::DSFuzzyModelEstimation)
-

Applications/CartographicDBValidation/otbVectorDataDSValidation.cxx

-/*=========================================================================
-
-  Program:   ORFEO Toolbox
-  Language:  C++
-  Date:      $Date$
-  Version:   $Revision$
-
-
-  Copyright (c) Centre National d'Etudes Spatiales. All rights reserved.
-  See OTBCopyright.txt for details.
-
-
-  This software is distributed WITHOUT ANY WARRANTY; without even
-  the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
-  PURPOSE.  See the above copyright notices for more information.
-
-=========================================================================*/
-
-#include "otbVectorDataToDSValidatedVectorDataFilter.h"
-#include "otbWrapperApplication.h"
-#include "otbWrapperApplicationFactory.h"
-#include "otbWrapperStringListParameter.h"
-
-#include "otbVectorData.h"
-#include "otbFuzzyDescriptorsModelManager.h"
-
-
-namespace otb
-{
-namespace Wrapper
-{
-
-class VectorDataDSValidation: public Application
-{
-
-
-public:
-   /** Standard class typedefs. */
-  typedef VectorDataDSValidation Self;
-  typedef Application Superclass;
-  typedef itk::SmartPointer<Self> Pointer;
-  typedef itk::SmartPointer<const Self> ConstPointer;
-
-
-  typedef double                          PrecisionType;
-  typedef otb::VectorData<PrecisionType>  VectorDataType;
-  typedef otb::VectorDataToDSValidatedVectorDataFilter<VectorDataType, PrecisionType>
-                                          VectorDataValidationFilterType;
-  typedef VectorDataValidationFilterType::LabelSetType
-                                          LabelSetType;
-  typedef FuzzyDescriptorsModelManager::DescriptorsModelType DescriptorsModelType;
-
-  typedef otb::Wrapper::StringListParameter::StringListType    StringListType;
-
-  /** Standard macro */
-  itkNewMacro(Self);
-
-  itkTypeMacro(VectorDataDSValidation, otb::Application);
-
-private:
-  void DoInit()
-  {
-    SetName("VectorDataDSValidation");
-    SetDescription("Vector data validation based on the fusion of features using Dempster-Shafer evidence theory framework.");
-
-    SetDocName("Vector Data validation");
-    SetDocLongDescription("This application validates or unvalidate the studied samples using the Dempster-Shafer theory.");
-    SetDocLimitations("None.");
-    SetDocAuthors("OTB-Team");
-    SetDocSeeAlso("http://en.wikipedia.org/wiki/Dempster-Shafer_theory");
-   
-    AddDocTag(Tags::FeatureExtraction);
-
-
-    AddParameter(ParameterType_InputVectorData, "in", "Input Vector Data");
-    SetParameterDescription("in", "Input vector data to validate");
-
-    AddParameter(ParameterType_InputFilename, "descmod", "Descriptors model filename");
-    SetParameterDescription("descmod", "Fuzzy descriptors model (xml file)");
-
-    AddParameter(ParameterType_StringList, "belsup", "Belief Support");
-    SetParameterDescription("belsup", "Dempster Shafer study hypothesis to compute belief");
-
-    AddParameter(ParameterType_StringList, "plasup", "Plausibility Support");
-    SetParameterDescription("plasup", "Dempster Shafer study hypothesis to compute plausibility");
-
-    AddParameter(ParameterType_String, "cri", "Criterion");
-    SetParameterDescription("cri", "Dempster Shafer criterion (by default (belief+plausibility)/2)");
-    MandatoryOff("cri");
-    SetParameterString("cri", "((Belief + Plausibility)/2.)");
-
-    AddParameter(ParameterType_Float, "thd", "Criterion threshold");
-    SetParameterDescription("thd", "Criterion threshold (default 0.5)");
-    MandatoryOff("thd");
-    SetParameterFloat("thd", 0.5);
-
-    AddParameter(ParameterType_OutputVectorData, "out", "Output Vector Data");
-    SetParameterDescription("out", "Output VectorData containing only the validated samples");
-
-    // Doc example parameter settings
-    SetDocExampleParameterValue("in", "cdbTvComputePolylineFeatureFromImage_LI_NOBUIL_gt.shp");
-    SetDocExampleParameterValue("belsup", "cdbTvComputePolylineFeatureFromImage_LI_NOBUIL_gt.shp");
-    SetDocExampleParameterValue("descmod", "DSFuzzyModel.xml");
-    SetDocExampleParameterValue("out", "VectorDataDSValidation.shp");
-    
-  }
-
-  void DoUpdateParameters()
-  {
-    // Nothing to do here : all parameters are independent
-
-
-    // .. //
-
-
-  }
-
-  void DoExecute()
-  {
-
-    //Read the vector data
-    VectorDataType::Pointer inVectorData = GetParameterVectorData("in");
-    inVectorData->Update();
-
-    // Load the descriptors model
-    std::string descModFile = GetParameterString("descmod");
-    DescriptorsModelType descMod = FuzzyDescriptorsModelManager::Read(descModFile.c_str());
-
-    LabelSetType Bhyp, Phyp;
-    int nbSet;
-
-    StringListType stringList = GetParameterStringList("belsup");
-    nbSet = stringList.size();
-
-    for (int i = 0; i < nbSet; i++)
-      {
-      std::string str = stringList[i];
-      Bhyp.insert(str);
-      }
-    stringList = GetParameterStringList("plasup");
-    nbSet = stringList.size();
-    for (int i = 0; i < nbSet; i++)
-      {
-      std::string str = stringList[i];
-      Phyp.insert(str);
-      }
-
-    // Process
-    m_ValidationFilter = VectorDataValidationFilterType::New();
-    m_ValidationFilter->SetInput(inVectorData);
-    m_ValidationFilter->SetDescriptorModels(descMod);
-    m_ValidationFilter->SetBeliefHypothesis(Bhyp);
-    m_ValidationFilter->SetPlausibilityHypothesis(Phyp);
-
-    m_ValidationFilter->SetCriterionFormula(GetParameterString("cri"));
-    m_ValidationFilter->SetCriterionThreshold(GetParameterFloat("thd"));
-
-    // Set the output image
-    SetParameterOutputVectorData("out", m_ValidationFilter->GetOutput());
-
-  };
-
-  VectorDataValidationFilterType::Pointer m_ValidationFilter;
-
-
-};
-}
-}
-
-OTB_APPLICATION_EXPORT(otb::Wrapper::VectorDataDSValidation);

Applications/ChangeDetection/CMakeLists.txt

-
-OTB_CREATE_APPLICATION(NAME MultivariateAlterationDetector
-                       SOURCES otbMultivariateAlterationDetector.cxx
-                       LINK_LIBRARIES OTBIO;OTBCommon;OTBBasicFilters)
-